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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P18530_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 834aa MW: 91675.5 Da PI: 6.1245 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.5 | 1.1e-18 | 22 | 79 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 ++t+eq+e+Le+++ ++++ps ++r++L +++ +++ +q+kvWFqNrR +ek+ GSMUA_Achr5P18530_001 22 YVRYTAEQVEALERVYSECPKPSSTRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 79 5789****************************************************97 PP | |||||||
2 | START | 166.2 | 2.3e-52 | 159 | 368 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg. 88 +aeea++e+++ka+ ++ Wv+++ +++g++++ +++ s+++sg a+ra+g+v ++++ +++++d++ W ++++ e+ +g GSMUA_Achr5P18530_001 159 IAEEALAEFLSKATGTAVDWVQMPGMKPGPDSIGIVAISHSSSGVAARACGLVNLEPTKASSSIIKDRPAWFHDCRNLEVFTMFPTGn 246 799*******************************************************************************999999 PP .EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE CS START 89 .galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvd 171 g+++l +++++a+++l+p Rdf+++Ry+ +l++g++vi+++S++ + p+ +++vRae+lpSg+li+p+++g+s v++v+h d GSMUA_Achr5P18530_001 247 gGTIELVYMQMYAPTTLAPaRDFWTLRYTTSLEDGSHVICERSLSGSGSGPNattAHQFVRAEMLPSGYLIRPCEGGGSIVHIVDHLD 334 9********************************************99998888999******************************** PP --SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 172 lkgrlphwllrslvksglaegaktwvatlqrqce 205 l++++++++lr+l++s+++ ++k++ a+l++ ++ GSMUA_Achr5P18530_001 335 LEAWSVPEVLRPLYESSRVVAQKMTIAALRHVRQ 368 *****************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.613 | 16 | 80 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.4E-14 | 18 | 84 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.45E-16 | 21 | 81 | No hit | No description |
SuperFamily | SSF46689 | 2.95E-16 | 21 | 83 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 3.0E-16 | 22 | 79 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-18 | 23 | 79 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.26E-6 | 73 | 111 | No hit | No description |
PROSITE profile | PS50848 | 24.53 | 149 | 378 | IPR002913 | START domain |
CDD | cd08875 | 1.14E-70 | 153 | 370 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.1E-19 | 157 | 364 | IPR023393 | START-like domain |
SMART | SM00234 | 9.0E-44 | 158 | 369 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.06E-35 | 158 | 371 | No hit | No description |
Pfam | PF01852 | 4.9E-50 | 159 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 2.8E-49 | 691 | 833 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 834 aa Download sequence Send to blast |
MAAVVAMRSG GMEKHSMDAG KYVRYTAEQV EALERVYSEC PKPSSTRRQQ LIRECPILAN 60 IEPKQIKVWF QNRRCREKQR KETSRLQAVN RKLTAMNKLL MEENERLQKQ VTQLVHENAY 120 MRQQLQNVSL ANDTSCESIV TTPQNPLRDA NNPAGLLSIA EEALAEFLSK ATGTAVDWVQ 180 MPGMKPGPDS IGIVAISHSS SGVAARACGL VNLEPTKASS SIIKDRPAWF HDCRNLEVFT 240 MFPTGNGGTI ELVYMQMYAP TTLAPARDFW TLRYTTSLED GSHVICERSL SGSGSGPNAT 300 TAHQFVRAEM LPSGYLIRPC EGGGSIVHIV DHLDLEAWSV PEVLRPLYES SRVVAQKMTI 360 AALRHVRQIA QETTGEVVCA TGRQPAILRT FGQRLNRGFN DAINGFTDDG WSLMGSDGMD 420 DIVIATNSTK KTGANASSNA FASAGGVICA KASMLLQSVP PALLVRFLRE HRSEWADYNV 480 DAYSAASLKA GVSSFSGSRP NRFSGSQIIM PLAHTVENEE FLEVVRLEGQ ALIQDGAILS 540 RDIHLLQLCC GIDENSLGAC FQLVFAPIDE LFPDDAPLLP SGFRVIPLDA KTNGLSSTRT 600 LDLASSLGVG STVNRSAGDA STDDYNLRSV LTIAFQFPYE VHLQDSIAAM ARQYVRSIVS 660 AIQRVSMAIT RSRPGHGIGQ KLVPGSPEAV TLARWICQSY NYHLGIDLLR YDGETEESLL 720 KMLWHHQDAV LCCTFEMQPI FTFANQAGLD MLETTLVALQ DITLDKIFDE AGRKELHSEF 780 AKLMEQGYLY LPAGTCLSGM GRQVSFEQAV VWKVLGEDND VHCLGLCFVN WSFL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009401955.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein HOX9 | ||||
Swissprot | A2Z8L4 | 0.0 | HOX9_ORYSI; Homeobox-leucine zipper protein HOX9 | ||||
TrEMBL | M0SZN2 | 0.0 | M0SZN2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P18530_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP374 | 38 | 197 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |