PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P18510_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 658aa MW: 72572.7 Da PI: 5.0414

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P18510_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	21.9	3e-07	82	111	1	27
--S---SGGGGTS...--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartG...tCkyGdrCkFaHgp 27 +kt+lC+f++r C++Gd C++aHg+ GSMUA_Achr5P18510_001 82 WKTSLCSFYRRQPgkaGCSHGDACRYAHGE 111 8******995479***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1000.10	5.1E-10	79	115	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	3.73E-5	80	116	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0038	81	111	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.77	81	112	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	5.4E-5	82	111	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF54928	6.45E-6	165	236	IPR012677	Nucleotide-binding alpha-beta plait domain
Gene3D	G3DSA:3.30.70.330	5.2E-6	165	227	IPR012677	Nucleotide-binding alpha-beta plait domain
CDD	cd00590	1.40E-4	165	227	No hit	No description
PROSITE profile	PS51687	34.535	297	658	IPR010280	(Uracil-5)-methyltransferase family
SuperFamily	SSF53335	4.55E-40	300	325	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
SuperFamily	SSF53335	4.55E-40	357	624	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Gene3D	G3DSA:3.40.50.150	3.2E-38	518	625	IPR029063	S-adenosyl-L-methionine-dependent methyltransferase
Pfam	PF13847	2.1E-8	564	620	IPR025714	Methyltransferase domain
CDD	cd02440	6.84E-7	566	621	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006396	Biological Process	RNA processing
GO:0000166	Molecular Function	nucleotide binding
GO:0008173	Molecular Function	RNA methyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 658 aa Download sequence Send to blast
MAAMEITAPP PSEENEVANR ESTAVVVSAG DDALEVGDGV DSSSAKRKRE EEEEEEEREV 60 EGVEETKVSD AGDGKTRRDL LWKTSLCSFY RRQPGKAGCS HGDACRYAHG EAELRIRPDN 120 TWDPTSERAK KLLRASNNGD DAKAESSEAE DPTVDVTSLD KCLIGLPRKW ASDNLKSFLD 180 GQGILYKTAK KKKGMTVGFV CFEDSQQLES AIEVLNANST SGKQIKVVDA IRRSHEKKSE 240 IPTSNQTKGQ LVDSEQCTDD PNTSTSTSLI EDDDAVEKDT SVFEGLVSKT TRTARDVVAP 300 LADLPYGDQL EKKKKTLMQT LKRLTRNARK ACPASVALPE WITKSRDIGG LPCKFEGILE 360 SPLANGYRNK CEFSVGVSLK GKPTVGFMVG NFREGITAIE EPINCPNVSR ISSEYALIFQ 420 EFLQSSVLPI WNRLENKGFW RQFTVREGRK TSQTSSTENA ENSVVEVMLI IQVFNFTSYW 480 ITKDSIKLYN ALVPFFGSAS WSLNVAPCTH LNTFFVTQSR IHDYISNLRF SISPTAFFQV 540 NTLAAERLYS LAGNWADLNP ETLLFDICCG TGTIGLTLAH RVGMVVGIEM NASAVSDAQR 600 NAMINDIKNC RFVCGKAEDV VGALLKEYLD VPKQHGIISE VSSMSHTGNY DVMNDMVN

Sequence ? help Back to Top

Protein Sequence Length: 658 aa Download sequence Send to blast

MAAMEITAPP PSEENEVANR ESTAVVVSAG DDALEVGDGV DSSSAKRKRE EEEEEEEREV  60
EGVEETKVSD AGDGKTRRDL LWKTSLCSFY RRQPGKAGCS HGDACRYAHG EAELRIRPDN  120
TWDPTSERAK KLLRASNNGD DAKAESSEAE DPTVDVTSLD KCLIGLPRKW ASDNLKSFLD  180
GQGILYKTAK KKKGMTVGFV CFEDSQQLES AIEVLNANST SGKQIKVVDA IRRSHEKKSE  240
IPTSNQTKGQ LVDSEQCTDD PNTSTSTSLI EDDDAVEKDT SVFEGLVSKT TRTARDVVAP  300
LADLPYGDQL EKKKKTLMQT LKRLTRNARK ACPASVALPE WITKSRDIGG LPCKFEGILE  360
SPLANGYRNK CEFSVGVSLK GKPTVGFMVG NFREGITAIE EPINCPNVSR ISSEYALIFQ  420
EFLQSSVLPI WNRLENKGFW RQFTVREGRK TSQTSSTENA ENSVVEVMLI IQVFNFTSYW  480
ITKDSIKLYN ALVPFFGSAS WSLNVAPCTH LNTFFVTQSR IHDYISNLRF SISPTAFFQV  540
NTLAAERLYS LAGNWADLNP ETLLFDICCG TGTIGLTLAH RVGMVVGIEM NASAVSDAQR  600
NAMINDIKNC RFVCGKAEDV VGALLKEYLD VPKQHGIISE VSSMSHTGNY DVMNDMVN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5xj1_A	6e-19	295	627	77	371	Uncharacterized RNA methyltransferase SP_1029
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JX620342	0.0	JX620342.1 Gossypium hirsutum clone NBRI_GE66566 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009401956.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 24 isoform X1
Swissprot	Q8L7S3	0.0	C3H24_ARATH; Zinc finger CCCH domain-containing protein 24
TrEMBL	M0SZN0	0.0	M0SZN0_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P18510_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP8493	31	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28450.2	0.0	C3H family protein

Publications ? help Back to Top
Wang Y, et al. Identification of tRNA nucleoside modification genes critical for stress response and development in rice and Arabidopsis. BMC Plant Biol., 2017. 17(1): p. 261 [PMID:29268705]