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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P14100_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 756aa MW: 83188.6 Da PI: 6.7854 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 64.9 | 1.2e-20 | 84 | 139 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p++++r +L+++lgL+ rqVk+WFqNrR+++k GSMUA_Achr5P14100_001 84 KKRYHRHTARQIQEMEAMFKECPHPDEKQRMKLSHELGLKPRQVKFWFQNRRTQMK 139 688899***********************************************998 PP | |||||||
2 | START | 130.5 | 2e-41 | 261 | 482 | 6 | 206 |
HHHHHHHHHHHC-TT-EEEE.........EXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGC CS START 6 aaqelvkkalaeepgWvkss.........esengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeq 71 aa+ lv++ +ep+W + e++ + +++e++r+s++v+m+ + v +ld + + GSMUA_Achr5P14100_001 261 AADHLVRMCNTNEPLWIRRGgstvevlnlEEHAR-----------McpwpmdlkqqqgrFRTETSRDSAMVIMNGITMVDAFLDAN-K 336 5666666666666666665533333322222222...........1222223333335679*************************.* PP T-TT-S....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--.-TTSEE-EE CS START 72 Wdetla....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppesssvvRael 147 W e ++ k t++v+s+g g l+lm aelq+lsplvp R+ f Ry++q +++g+w+ivd vd ++ +s++ ++ GSMUA_Achr5P14100_001 337 WMELFPslvaKSRTVQVLSPGvpghgnGCLHLMHAELQFLSPLVPaREAHFFRYCQQnSEEGTWIIVDFPVDGFRDGI-QSPFPWYRR 423 ******9*99******************************************************************98.89999999* PP SSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 148 lpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 ++Sg++i++++ng+skv+wveh++++++ +h++++++v+ g a+ga +wv+ lqrqce+ GSMUA_Achr5P14100_001 424 RTSGCVIQDMPNGYSKVIWVEHAEVEDKPVHQIFQQFVSAGEAFGATRWVSVLQRQCER 482 *********************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.51E-20 | 70 | 142 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.6E-22 | 79 | 146 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.232 | 81 | 141 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.1E-19 | 82 | 145 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 4.0E-18 | 84 | 139 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.87E-19 | 84 | 142 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 116 | 139 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 39.06 | 247 | 485 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-26 | 250 | 484 | No hit | No description |
CDD | cd08875 | 1.38E-104 | 251 | 481 | No hit | No description |
SMART | SM00234 | 7.5E-23 | 256 | 482 | IPR002913 | START domain |
Pfam | PF01852 | 3.8E-34 | 305 | 482 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.47E-17 | 500 | 735 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048497 | Biological Process | maintenance of floral organ identity | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 756 aa Download sequence Send to blast |
MYGDCQVLSS MVGGNVVSPD SLFSSSIQNP SLSFMANMPP FHAFSSIIPK EEGMMLMGRG 60 GSKEEEMESR SGSGPLDGQT AAKKKRYHRH TARQIQEMEA MFKECPHPDE KQRMKLSHEL 120 GLKPRQVKFW FQNRRTQMKA QQDRADNVVL RAENESLKND NFRLQAAIRN VVCPSCGGPA 180 ILGEMSFDEQ QLRIENARLK DERLSCIASR YSGRQHFHEP PVVSCTDLIP IPQISDEPSP 240 FPGMLIMDQD RPLVLDLAMT AADHLVRMCN TNEPLWIRRG GSTVEVLNLE EHARMCPWPM 300 DLKQQQGRFR TETSRDSAMV IMNGITMVDA FLDANKWMEL FPSLVAKSRT VQVLSPGVPG 360 HGNGCLHLMH AELQFLSPLV PAREAHFFRY CQQNSEEGTW IIVDFPVDGF RDGIQSPFPW 420 YRRRTSGCVI QDMPNGYSKV IWVEHAEVED KPVHQIFQQF VSAGEAFGAT RWVSVLQRQC 480 ERLASLMARN ISDNGVISSP EARKNMMRLS QRMITTFCTG VYASGMQSWT ALSDSSDDTV 540 RVTTKKNTAP GQPNGVILTA VSTTWLPSSH HQVFELLTDE QRRSQLDVLS SGNSLHEVAH 600 IANGSHPRNC ISLLRVNAAS NSSHSVDLLL QESSTHPSGG SIVVYAAIDV DAVQVAMSSE 660 DPSYIPLLPT GFVISPAARQ PNAGTGSGSD GHATVGCLLT VGMQVLATAV PSAKLNLSTV 720 TAINNHLCNT VQQVRAVIAG AGGTAMAEPA AVAPDQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018681950.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3-like isoform X1 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | M0SYD9 | 0.0 | M0SYD9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P14100_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |