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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P13500_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 146aa MW: 15944 Da PI: 4.7694 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 47.3 | 5.2e-15 | 2 | 44 | 10 | 55 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ a++ ++g GSMUA_Achr5P13500_001 2 RNWGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDVAALTIKG 44 57**********843...6**********************99887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.941 | 1 | 52 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-28 | 1 | 58 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-27 | 1 | 53 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.37E-28 | 1 | 54 | No hit | No description |
SuperFamily | SSF54171 | 4.45E-18 | 2 | 53 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.7E-9 | 2 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MRNWGKWVSE IREPRKKSRI WLGTFPTAEM AARAHDVAAL TIKGQSAHLN FPELAAVLPR 60 PATAAPKDIQ AAAALAAACP GQAEQPVSHS LTTPSSDGED ALFDLPDLFL DLRDAFCHSS 120 PPPSSWLPST EEDGIVFRVE EPFLWE |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 4e-14 | 2 | 52 | 21 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009400694.1 | 1e-103 | PREDICTED: ethylene-responsive transcription factor ERF034-like | ||||
Swissprot | Q8LBQ7 | 7e-45 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | M0SY79 | 1e-101 | M0SY79_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr5P13500_001 | 1e-102 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25820.1 | 2e-33 | ERF family protein |
Publications ? help Back to Top | |||
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