PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P11770_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 398aa    MW: 43633 Da    PI: 9.7658
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P11770_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.98.9e-066082123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C+ C+k F r  nL+ H r H
  GSMUA_Achr5P11770_001 60 FVCEVCNKGFQREQNLQLHRRGH 82
                           89*******************88 PP
2zf-C2H211.10.0012137158223
                            EETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                             C +C+k++  +s+ k H + +
  GSMUA_Achr5P11770_001 137 NCDKCSKRYAVQSDWKAHSKIC 158
                            6*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.1E-65982IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.57E-75982No hitNo description
PROSITE profilePS5015711.0946082IPR007087Zinc finger, C2H2
PfamPF121712.4E-56082IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.00416082IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806282IPR007087Zinc finger, C2H2
SMARTSM00355190101131IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.0E-4124157IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.57E-7131156No hitNo description
SMARTSM00355240136156IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MASASRPMSF FEAREDEHRM QAMQQQQSSS VPAPSTAAPV KKRRNLPGNP CKTLMATNRF  60
VCEVCNKGFQ REQNLQLHRR GHNLPWKLRQ KDPKEVRRRV YLCPEPTCPH HDPSRALGDL  120
TGIKKHFCRK HGEKKWNCDK CSKRYAVQSD WKAHSKICGT REYRCDCGTL FSRRDSFITH  180
RAFCEALAHE NGRLPSGLHT LGGSHIYGNS NMFFSLPRMS SHTTSLHGQH IISPPKPLTS  240
GQLSATALLQ RAAQLGATSS RGSSFLACFS GNHGSVIDGF GPQMENDTHF QYLMNSLARG  300
GIDLVGSSAG MATFEGGCTT TGGRHGQENT GVGTFNVNNI DEPKYNLPSS DGLTRDFLGV  360
GSTTRSMGGG ISQREQHHGI AMSSGSSSQY SFAGGSLQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C9e-33132196367Zinc finger protein JACKDAW
5b3h_F9e-33132196367Zinc finger protein JACKDAW
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1206031e-127AK120603.1 Oryza sativa Japonica Group cDNA clone:J013149P10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009400312.11e-170PREDICTED: protein indeterminate-domain 2-like
RefseqXP_009400313.11e-170PREDICTED: protein indeterminate-domain 2-like
RefseqXP_009400314.11e-170PREDICTED: protein indeterminate-domain 2-like
TrEMBLM0SXQ60.0M0SXQ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P11770_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.12e-98indeterminate(ID)-domain 2