PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P07670_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 352aa MW: 38810.4 Da PI: 6.9599

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P07670_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.5	3e-33	46	100	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+WtpeLHerF+eav+qLGG++kAtPk++++lm+++gLtl+h+kSHLQkYRl GSMUA_Achr5P07670_001 46 KPRLKWTPELHERFIEAVDQLGGADKATPKSVMRLMGIPGLTLYHLKSHLQKYRL 100 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.131	43	103	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	9.1E-32	44	101	IPR009057	Homeodomain-like
SuperFamily	SSF46689	3.4E-17	45	101	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	46	101	IPR006447	Myb domain, plants
Pfam	PF00249	4.7E-10	48	99	IPR001005	SANT/Myb domain
Pfam	PF14379	1.1E-24	148	194	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence Send to blast
MYHQHQQGGH NNILSSRTAF PAERHLLLQG GRIPEESGLV LSTDAKPRLK WTPELHERFI 60 EAVDQLGGAD KATPKSVMRL MGIPGLTLYH LKSHLQKYRL SKNLQAQASS GSAKIATGCK 120 LVAGRTAEGN GLLLGSTNII PQSNKNIPIN EALQMQIEVQ RRLQEQLEVQ RHLQLRIEAQ 180 GKYLQSVLEK AQETLGKQNL GSPGLEAAKV QLSELVSKVS NECFSNAFPG LEEIRNPNTL 240 QVNPSQLADC SAESCLTSSE GSQKDQDMTN FHRSLRAYGG GADSEAQQKE RSEEHMFLEH 300 PNNKRVAGQQ DRGKQSNSFG MPGHTAQLDL NADEDNEGDR DSKFDLNGFG WS

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence Send to blast

MYHQHQQGGH NNILSSRTAF PAERHLLLQG GRIPEESGLV LSTDAKPRLK WTPELHERFI  60
EAVDQLGGAD KATPKSVMRL MGIPGLTLYH LKSHLQKYRL SKNLQAQASS GSAKIATGCK  120
LVAGRTAEGN GLLLGSTNII PQSNKNIPIN EALQMQIEVQ RRLQEQLEVQ RHLQLRIEAQ  180
GKYLQSVLEK AQETLGKQNL GSPGLEAAKV QLSELVSKVS NECFSNAFPG LEEIRNPNTL  240
QVNPSQLADC SAESCLTSSE GSQKDQDMTN FHRSLRAYGG GADSEAQQKE RSEEHMFLEH  300
PNNKRVAGQQ DRGKQSNSFG MPGHTAQLDL NADEDNEGDR DSKFDLNGFG WS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-21	46	102	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018681853.1	0.0	PREDICTED: myb-related protein 2-like
Refseq	XP_018681854.1	0.0	PREDICTED: myb-related protein 2-like
Swissprot	Q9SQQ9	1e-119	PHL9_ARATH; Myb-related protein 2
TrEMBL	M0SWJ6	0.0	M0SWJ6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P07670_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3574	38	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-105	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]