PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P07270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family AP2
Protein Properties Length: 487aa    MW: 53901.1 Da    PI: 6.844
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P07270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2521.8e-16177226155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV++++++grW+++I+d      + k+++lg f+t + Aa+a+++a+ k++g
  GSMUA_Achr5P07270_001 177 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTSYAAARAYDRAAIKFRG 226
                            78*******************......55************************997 PP
2AP241.53.4e-13269319155
                    AP2   1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 
                            s+y+GV+++k  grW+A+       g    +k+++lg f+++ eAa+ +++a+ k +g
  GSMUA_Achr5P07270_001 269 SKYRGVTRHK-CGRWEAR---M---GqllGKKYIYLGLFDSEIEAARTYDKAAIKCHG 319
                            89*****999.7******...5...334336**********99***********9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541714.77E-15177235IPR016177DNA-binding domain
PfamPF008475.8E-9177226IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.4E-16178235IPR001471AP2/ERF domain
PROSITE profilePS5103217.372178234IPR001471AP2/ERF domain
CDDcd000182.37E-11178236No hitNo description
SMARTSM003801.4E-31178240IPR001471AP2/ERF domain
CDDcd000187.71E-25269327No hitNo description
PfamPF008471.1E-8269319IPR001471AP2/ERF domain
SuperFamilySSF541711.24E-16269328IPR016177DNA-binding domain
PROSITE profilePS5103215.83270327IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-15270327IPR001471AP2/ERF domain
SMARTSM003803.6E-30270333IPR001471AP2/ERF domain
PRINTSPR003671.8E-5271282IPR001471AP2/ERF domain
PRINTSPR003671.8E-5309329IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 487 aa     Download sequence    Send to blast
MLDLNVASAG ESTCVGEKPI LEGAGGGHIV SSETSESCVH NAEASTNAAD ENSFSTRQVG  60
APAMEFGILM SSASAEGEND VDEGIEVDRN DGVQEPGLIT RQLFPPEPVV MNGLRPFVEA  120
SFLPSSSSPQ WKDLSFYQAN VPTKVTVLHQ QQWQQQQPKP QQQQVKRSRR GPRSRSSQYR  180
GVTFYRRTGR WESHIWDCGK QVYLGGFDTS YAAARAYDRA AIKFRGVDAD INFNLSDYEE  240
DLEQMRNLSK EEFVHILRRQ STGFTRGSSK YRGVTRHKCG RWEARMGQLL GKKYIYLGLF  300
DSEIEAARTY DKAAIKCHGK EAVTNFDPRT YVEDLLAGAG SEGHNVDLDL RISQPIVDSP  360
KNVKNPTDII SSYGPFGATA AEKVYANNPS WHPTSVPQHN NLRLQNFHAW TARNPAFHSN  420
TEERVGEKWL MVGMQALPNW EWQMHGPTLS PLFSPAASSG FSTASVTAAI TALNLPASAT  480
PPFPPTR
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Together with IDS1, controls synergistically inflorescence architecture and floral meristem establishment via the regulation of spatio-temporal expression of B- and E-function floral organ identity genes in the lodicules and of spikelet meristem genes. Prevents lemma and palea elongation as well as grain growth. Regulates the transition from spikelet meristem to floral meristem, spikelet meristem determinancy and the floral organ development (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q8H443}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399885.10.0PREDICTED: floral homeotic protein APETALA 2
RefseqXP_018681843.10.0PREDICTED: floral homeotic protein APETALA 2
SwissprotB8B8J21e-108AP23_ORYSI; APETALA2-like protein 3
TrEMBLM0SWF60.0M0SWF6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P07270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.33e-94related to AP2.7