PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P06450_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 476aa    MW: 52252.9 Da    PI: 8.4614
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P06450_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.31.3e-057092123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           ++C++C+k F r  nL+ H r H
  GSMUA_Achr5P06450_001 70 FVCEICNKGFQRDQNLQLHRRGH 92
                           89*******************88 PP
2zf-C2H211.30.0011146168123
                            EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                            +kC +C+k +  +s+ k H + +
  GSMUA_Achr5P06450_001 146 WKCDKCSKKYAVQSDWKAHSKIC 168
                            58*****************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.5E-56992IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-76992No hitNo description
PfamPF121717.5E-57092IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.9497092IPR007087Zinc finger, C2H2
SMARTSM003550.0177092IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
SMARTSM00355110111141IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.2E-4134167IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.4E-7141166No hitNo description
SMARTSM00355150146166IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MIQQHQLVDE TMSNLTSASG EASVSSNQQS SFASPNPNPT KKKRNLPGNP DPDAEVIALS  60
PKTLMATNRF VCEICNKGFQ RDQNLQLHRR GHNLPWKLKQ RSSKEVRKKV YICPEVTCVH  120
HDPSRALGDL TGIKKHFSRK HGEKKWKCDK CSKKYAVQSD WKAHSKICGT REYRCDCGTL  180
FSRRDSFITH RAFCDALAEE SARAIAANPL ANHHTILFPQ PAASHEPSLL QQTILQRQEH  240
QHQHLNLRSD MPPWLACQAP ISLAHLDLPS SVCSTRLDRE CSRENPAPHP PLPQAFQAPA  300
SSPHMSATAL LQKAAEMGAT MSRPPHLGQM ATHTANAVAV PNSASGFDMV MNSLTSTPGF  360
DGSFDDAFGG MLGSEREPGN SNMQSSTRRH GMAEEAGGVG GGNDGKTRDF LGLKAFPHRN  420
ILNLTALDPC MSSTPFEHHQ QSIATINTPV IYEKSTDCSH SPPLTFSFSA TFCGIN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35142203364Zinc finger protein JACKDAW
5b3h_F7e-35142203364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196108KLKQRSSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399796.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_018681837.10.0PREDICTED: protein indeterminate-domain 7
RefseqXP_018681839.10.0PREDICTED: protein indeterminate-domain 7
SwissprotQ8H1F51e-123IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLM0SW740.0M0SW74_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P06450_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20238320
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-100indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]