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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr5P05010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ARF | ||||||||
Protein Properties | Length: 871aa MW: 98035.2 Da PI: 5.98 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 69.5 | 4.6e-22 | 39 | 140 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+ GSMUA_Achr5P05010_001 39 FCKTLTASDTSTHGGFSVPRRAAEKIfpaldfsM-QPPA-QEIQARDLHENLWTFRHIYRGQPKRHLLTTGWSLFVSGKKLFAGDSVL 124 99*****************************954.4444.48********************************************** PP EEE-SSSEE..EEEEE-S CS B3 82 Fkldgrsefelvvkvfrk 99 F ++++++l+++++r+ GSMUA_Achr5P05010_001 125 FI--RDEKQQLLLGIRRA 140 **..5688889****997 PP | |||||||
2 | Auxin_resp | 115.2 | 5.7e-38 | 165 | 248 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPra++seFv++++k++ka++ +++ +GmRf+m fete+s +rr++Gt++g+sdldpvrW+nS+W +L+ GSMUA_Achr5P05010_001 165 AAHAAANNSPFTVFYNPRACPSEFVIPFAKYQKAVYsNQIFLGMRFRMLFETEESGTRRYMGTITGISDLDPVRWKNSQWHNLQ 248 79*********************************9899******************************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.57E-42 | 29 | 168 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.0E-40 | 31 | 154 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 4.73E-18 | 38 | 130 | No hit | No description |
SMART | SM01019 | 1.4E-21 | 39 | 141 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.603 | 39 | 141 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.9E-20 | 39 | 140 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 7.1E-33 | 165 | 248 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 1.3E-8 | 736 | 823 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 27.539 | 738 | 822 | IPR000270 | PB1 domain |
SuperFamily | SSF54277 | 3.24E-7 | 751 | 816 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 871 aa Download sequence Send to blast |
MMRTIVPISH TFLTIAYEKE ALLASELALK QTRSPTEFFC KTLTASDTST HGGFSVPRRA 60 AEKIFPALDF SMQPPAQEIQ ARDLHENLWT FRHIYRGQPK RHLLTTGWSL FVSGKKLFAG 120 DSVLFIRDEK QQLLLGIRRA NRQPTSISSS VLSSDSMHIG ILAAAAHAAA NNSPFTVFYN 180 PRACPSEFVI PFAKYQKAVY SNQIFLGMRF RMLFETEESG TRRYMGTITG ISDLDPVRWK 240 NSQWHNLQVG WDESAAGERH NRVSIWEIEP VIAPFFICPP FFRKRTRQPG MLDDESSEME 300 NIFKRAMPWL GEETCIKDSE TQSTVMPGLS LVQWMNMQQN PSLASQTLQT EYLCSLAGPV 360 RNLGTTDLSR PLGLQASKQN NIIQPQVLIQ IQLQQQQHQP QQEPPTMIQN KELLQTSLHQ 420 NQQQHPQQLL LQQQKQQQQH QDQQLEQQYQ PQPSRILAVN QQLSDQQQSS FSQPRMQQPP 480 FPQIQESQKT LPDVLQQLLN SHSLVQQPMI PQPSEGTQSG FTNDNPFCST SPSANNGAIL 540 PHSILNGIQN YTLESTEKTS QSPLTPFSKV QNQGVIAPQT CVGNTTQMDY LDTTSSATSV 600 CLSQTDGPLH KIFPLSSFNQ PSMLRVAPTY GDVQGTDPGD NVPFGDNIDS SLELPLTIDT 660 MLANSIDSGK YQNRITRDVV ANYNASKDAQ QDLSLSMVSQ AFGIPDMAFN SIDSTTNENV 720 FLTKSSWTPV PPPLQHMRTY TKVYKRGAVG RSIDITRYSG YDELKYDLAR MFSIEGQLED 780 RQRIGWKLVY VDHENDVLLV GDDPWEEFVN CVRCIKILSP QEVQQMSIDV DLENNSLLNQ 840 ACSSSDGGNA WRGHHDQNSG NLSAGSYDHF E |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-123 | 29 | 269 | 148 | 388 | Auxin response factor 5 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009399614.1 | 0.0 | PREDICTED: auxin response factor 19-like isoform X2 | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | M0SVT0 | 0.0 | M0SVT0_MUSAM; Auxin response factor | ||||
STRING | GSMUA_Achr5P05010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP9045 | 33 | 38 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 1e-157 | auxin response factor 19 |