PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P03960_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ARF
Protein Properties Length: 559aa    MW: 61219.8 Da    PI: 6.3451
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P03960_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.62.6e-141211794099
                            E.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                     B3  40 d.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            d  +g  +++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +++++ l+++++r+
  GSMUA_Achr5P03960_001 121 DaNNGGGFSFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--RTENGDLCMGIRRA 179
                            44678899*************************************..45888889999986 PP
2Auxin_resp116.52.3e-38206289183
             Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                            aa+ a+ +++FevvY+Pr+st+eF+vk+++v++a++++++ GmRfkmafetedss++++ +Gt+++v+ +dpv+WpnS+Wr+L+
  GSMUA_Achr5P03960_001 206 AATLAARGQPFEVVYYPRVSTPEFCVKAASVKAAMRIQWCSGMRFKMAFETEDSSRISWfMGTISSVQIADPVQWPNSPWRLLQ 289
                            688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-13110181IPR015300DNA-binding pseudobarrel domain
CDDcd100173.08E-9112178No hitNo description
PROSITE profilePS508639.248115180IPR003340B3 DNA binding domain
PfamPF023625.2E-12123179IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-16129181IPR015300DNA-binding pseudobarrel domain
PfamPF065071.8E-33206289IPR010525Auxin response factor
PROSITE profilePS5174520.608473553IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 559 aa     Download sequence    Send to blast
MKQINKCLDS QLWHACAGGM VQMPAVNSKV YYFPQGHAEH AQGSVDFGTS QRIPPLILAT  60
VTAVKFLAEP ETDEVFAKIR MVPLTADELE CGQDDALGLV IDGSNTQEKL ASFAKTLTQS  120
DANNGGGFSF RHIYRGTPRR HLLTTGWSTF VNQKKLVAGD SIVFLRTENG DLCMGIRRAK  180
RGGVGGGPEI PSGWILPNGN YSVIEAATLA ARGQPFEVVY YPRVSTPEFC VKAASVKAAM  240
RIQWCSGMRF KMAFETEDSS RISWFMGTIS SVQIADPVQW PNSPWRLLQV TWDEPDFLQN  300
VKCVNPWLVE LVSNMPTIHL APFSPPKKKI CISQYPDFCL EGQPPLPMFL RDPLGHGTSP  360
LCCFPDSAPA GIQGARHAHF GVSLSDIHLN KLQLGLFHAG VHRLDQTTPP SRTTTGLIID  420
NPAILLFGKT ILTEDQISLS NSGDMVFPGA TGNSSADGNL EKTTNMSDLG LETGHCKIFM  480
ESVDVGRTLD LSMFESYEEL YTKLADMFGI GKSEIRSHMI YNDAAGAVKH TGDEPYSEFM  540
KTARRLTIST DSGSDDIGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A2e-61431015353Auxin response factor 1
4ldy_B2e-61431015353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018682205.10.0PREDICTED: auxin response factor 18-like isoform X2
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLM0SVH50.0M0SVH5_MUSAM; Auxin response factor
STRINGGSMUA_Achr5P03960_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP51637152
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]