PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P02170_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 307aa    MW: 34801.9 Da    PI: 6.7048
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P02170_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.22e-50221492128
                    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 
                             pGfrFhPtdeelv +yL++kve+k+l++ e+ikevdiyk++PwdLp +++a+e+ewyfF+ r +ky+++ r+nr+t sg+Wkatg d
  GSMUA_Achr5P02170_001  22 LPGFRFHPTDEELVGFYLRRKVEKKPLSV-EIIKEVDIYKYDPWDLP-TITAGENEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGID 107
                            69***************************.89***************.778899********************************** PP

                    NAM  90 kevlskkgel...vglkktLvfykgrapkgektdWvmheyrl 128
                            ++++ + g++   +glkk+Lv+y+g+a kg+ktdW+mhe+rl
  GSMUA_Achr5P02170_001 108 RPIHPAAGHAaacIGLKKSLVYYRGSAGKGTKTDWMMHEFRL 149
                            ****984444455***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-5318177IPR003441NAC domain
PROSITE profilePS5100553.46321177IPR003441NAC domain
PfamPF023653.2E-2523149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MEKKGEQEAV AVGEQKEEDV VLPGFRFHPT DEELVGFYLR RKVEKKPLSV EIIKEVDIYK  60
YDPWDLPTIT AGENEWYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDRPI HPAAGHAAAC  120
IGLKKSLVYY RGSAGKGTKT DWMMHEFRLP AGGSGKITTT PSMHEAEIWT ICRIFKRSPI  180
SYRKQTNSWR EASTSSSTRK QIAADSSCVT SSFECDNGND YRCCASSGHS NGEQGEMELA  240
THYYQENNQV SGGQWNPIHQ PPLLYTNAGQ SPTMDECFRS DGDWDELGRI VEFMRDQTLL  300
PYDCGYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-47121781169Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399061.10.0PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X1
RefseqXP_009399062.10.0PREDICTED: transcription factor JUNGBRUNNEN 1 isoform X2
SwissprotQ9SK555e-80NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM0SUZ60.0M0SUZ6_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P02170_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-82NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]