PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr5P01170_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 393aa MW: 43685.8 Da PI: 7.7997

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr5P01170_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	20.2	1.6e-06	113	134	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C +Cgk F+r nL+ H+r H GSMUA_Achr5P01170_001 113 FCLICGKGFKRDANLRMHMRGH 134 6*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	4.75E-5	110	138	No hit	No description
SMART	SM00355	0.012	112	134	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.552	112	139	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	4.5E-5	114	138	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	114	134	IPR007087	Zinc finger, C2H2
SMART	SM00355	71	161	194	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	30	199	221	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 393 aa Download sequence Send to blast
MLSNLSFLEQ KIHQVQDIVR SIISQEGRAN ELAAQQQLVT ADLTYIIIQL ISTAGTLLPN 60 IKNALLSATP PVAQTDHDIK DYDDGMDGEN LPPGSYEVLQ LEKEEILAPH THFCLICGKG 120 FKRDANLRMH MRGHGDEYKT AAALAKPSKE ASSEPAIIRR YSCPFVGCKR NKEHKKFQPL 180 KTILCVKNHY KRSHCDKSYT CSRCKTKKFS VIADLKTHEK HCGRDKWICS CGTTFSRKDK 240 LFGHVALFQG HTPAIPMDDA KVSGMSDHVQ VGETTNGMVA NMGYNFSGNA SDDAQSLDIK 300 DVDDGQGYFS PMNFDACNFG GLDEFPRSAY DVSESPFSFL STGTCTNIFL FACGGHYTSF 360 PKQKKKTIYD LLKGSSLFRS LPTLFIETCA FIN

Sequence ? help Back to Top

Protein Sequence Length: 393 aa Download sequence Send to blast

MLSNLSFLEQ KIHQVQDIVR SIISQEGRAN ELAAQQQLVT ADLTYIIIQL ISTAGTLLPN  60
IKNALLSATP PVAQTDHDIK DYDDGMDGEN LPPGSYEVLQ LEKEEILAPH THFCLICGKG  120
FKRDANLRMH MRGHGDEYKT AAALAKPSKE ASSEPAIIRR YSCPFVGCKR NKEHKKFQPL  180
KTILCVKNHY KRSHCDKSYT CSRCKTKKFS VIADLKTHEK HCGRDKWICS CGTTFSRKDK  240
LFGHVALFQG HTPAIPMDDA KVSGMSDHVQ VGETTNGMVA NMGYNFSGNA SDDAQSLDIK  300
DVDDGQGYFS PMNFDACNFG GLDEFPRSAY DVSESPFSFL STGTCTNIFL FACGGHYTSF  360
PKQKKKTIYD LLKGSSLFRS LPTLFIETCA FIN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269\|PubMed:17535918, ECO:0000269\|PubMed:18826429, ECO:0000269\|PubMed:19321711, ECO:0000269\|PubMed:23935008}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269\|PubMed:17535918}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009399174.1	0.0	PREDICTED: zinc finger protein STOP1 homolog
Swissprot	Q9C8N5	1e-162	STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBL	M0SUP6	0.0	M0SUP6_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr5P01170_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1512	38	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G34370.2	1e-165	C2H2 family protein

Publications ? help Back to Top
Kobayashi Y, et al. Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions. Plant Physiol., 2013. 163(1): p. 180-92 [PMID:23839867] Yokosho K,Yamaji N,Ma JF Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench). Plant Cell Physiol., 2014. 55(12): p. 2077-91 [PMID:25273892] Geng X, et al. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. Plant J., 2017. 90(3): p. 491-504 [PMID:28181322] Balzergue C, et al. Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation. Nat Commun, 2017. 8: p. 15300 [PMID:28504266] Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. Front Plant Sci, 2017. 8: p. 822 [PMID:28567051] Jiang F, et al. Identification and characterization of suppressor mutants of stop1. BMC Plant Biol., 2017. 17(1): p. 128 [PMID:28738784] Daspute AA, et al. Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms. Front Plant Sci, 2017. 8: p. 1358 [PMID:28848571] Sharma A,Wai CM,Ming R,Yu Q Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis. Genome Biol Evol, 2017. 9(9): p. 2170-2190 [PMID:28922793] Zhang Y, et al. The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis. Front Plant Sci, 2018. 9: p. 118 [PMID:29491872]