PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr5P01120_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 385aa    MW: 42158.2 Da    PI: 9.6134
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr5P01120_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.16.7e-05163185223
                            EETTTTEEESSHHHHHHHHHH.T CS
                zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                            +CpdCg+ F   ++L+ H+ + H
  GSMUA_Achr5P01120_001 163 SCPDCGEIFMKADSLELHQAVrH 185
                            6******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.933162190IPR007087Zinc finger, C2H2
PROSITE patternPS000280164185IPR007087Zinc finger, C2H2
SuperFamilySSF563993.17E-19187384No hitNo description
Gene3DG3DSA:3.90.228.102.3E-10189384IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MAAETGRLNE PIKQTQRVAA CPSSAGSLRG FFSCERRRAG EVRKSRRKRM GCSGSFCRSK  60
DLQRPEASLP EPCKRRASVS GRTATERSRK MPLTEINNAV STPLASVAVS PASVAVSSSS  120
SPLGGSFRGM NLGRLSGCYE CHMVVDPING TPRYSSVRAT ISSCPDCGEI FMKADSLELH  180
QAVRHAVSEL GPEDTGRKIV EIIFQSSWLK KRTPACRIER ILKVHNTSKT MARFEDYRDS  240
IKSKASKLAK RHPRSTADGN ELLRFHCTTF RCTLGLNGAT NLCDSIPQCS LCSIIRDGFK  300
ADAAGSIRTM ATSGRAHDAE HVTSENERIA MLVCRVIAGR VRRSQEAEEE YDSAAGITGA  360
HSNLDEMFVF NPKAILPCFV VIYRC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009399179.10.0PREDICTED: uncharacterized protein LOC103983649
TrEMBLM0SUP10.0M0SUP1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr5P01120_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP26333880
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.16e-95C2H2-like zinc finger protein