PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P33630_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 470aa    MW: 50735.3 Da    PI: 5.7757
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P33630_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.71.3e-053483851254
                            HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                    HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                            R +++ +++  L++l+ +      +K + a++L +A+eYIk L
  GSMUA_Achr4P33630_001 348 RKEKLGDRITALQQLVSPF-----GKTDTASVLHEAIEYIKFL 385
                            677888999*******998.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.992336385IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-8346402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-5346389No hitNo description
SuperFamilySSF474591.83E-11346403IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MADDFQTAGT CSGGSVWNPA RSITAIDMPA AVSCIADIAG NASSWAAAEL VDGKARFCDE  60
SSVSGSSVTF RGSRKVQQAT AAPSVINSTL QLPILGSATP SMDWSTQGSA NRARGDETSF  120
HAMLHEEISA RAIFGQYQSI ESNQVQTGIE TTMNLPRDAD QNFVLDHHHL SSGNESGDVG  180
VSSYPLIISS SYGSPSSMLQ GILEAESRTL QPPVYDDWAT NYQSPMMDCR DSTNELLQSS  240
WPQLLRSSPP KHHPGNLLQF SNNAPFWNAT ATASVSETNS GSCSTAPSQL DKKVFDEKNI  300
GSNFTDMTNS DGVRDSYSSS SSGKPGQDPA FKKPRIETPS PLPSFKVRKE KLGDRITALQ  360
QLVSPFGKTD TASVLHEAIE YIKFLHDQVG VLSTPYLKNG HAMQQQQQVL QRLTLLWLDL  420
QGSNKSKDGE GPRPDLRSRG LCLVPIASTY PVTSGTTADF WHPTFGGTFR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8378342e-36CT837834.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA129D11, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397158.10.0PREDICTED: transcription factor bHLH112 isoform X2
TrEMBLM0SUC50.0M0SUC5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P33630_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22163787
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61660.13e-55bHLH family protein