PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P33270_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 266aa    MW: 28336.1 Da    PI: 10.4893
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P33270_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-202575155
                    AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                           ++++GVr ++ +gr++AeIrdp   gk+ r +lg+f+taeeAa+a++aa+++++g
  GSMUA_Achr4P33270_001 25 THFRGVRKRP-WGRYAAEIRDP---GKKSRLWLGTFDTAEEAARAYDAAARQFRG 75
                           589*******.**********8...557***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.6E-142575IPR001471AP2/ERF domain
CDDcd000183.07E-182584No hitNo description
PROSITE profilePS5103223.8282683IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-222684IPR016177DNA-binding domain
SMARTSM003802.1E-382689IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-322683IPR001471AP2/ERF domain
PRINTSPR003671.1E-102738IPR001471AP2/ERF domain
PRINTSPR003671.1E-104965IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MTPREQPAAC GRGRAAGGDG GGKETHFRGV RKRPWGRYAA EIRDPGKKSR LWLGTFDTAE  60
EAARAYDAAA RQFRGSKAKT NFPYPSPGIV VVATAAGGGS PSSQSSTVES SGREASAAVP  120
PLAIPLSPSL DRGLVHRGGA RFPFQPFPAI AAHAMPAAHP CFLFDSIVRP DKSATAAMNH  180
HRLTLCPPMM IAGLHGRMAR GSQSDSDYSS IGGSAWVDAS APFFLPFLPL ILIYSIIIII  240
IIIIIIIIII IIIIIIIIII IISFFL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-212283163ATERF1
3gcc_A2e-212283163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397200.11e-105PREDICTED: ethylene-responsive transcription factor 4-like
TrEMBLM0SU890.0M0SU89_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P33270_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38463174
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.17e-27erf domain protein 9