PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P32000_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 182aa MW: 19818.8 Da PI: 9.1295

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P32000_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	135.8	1.6e-42	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+++Cv+ap+fpa++p+kfa vhk+FGasnv+kll+++ ++r da+sslvyeA+ar+rdPvyG+vg i++l+ q++ GSMUA_Achr4P32000_001 13 PCAACKLLRRRCTQGCVFAPHFPADEPQKFASVHKVFGASNVSKLLREIAAQHRGDAVSSLVYEANARVRDPVYGCVGAITSLHCQIQ 100 7************************************************************************************* PP DUF260 89 qlkaelallkee 100 l+a+la+++++ GSMUA_Achr4P32000_001 101 ALQAQLAVARAK 112 *****99876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.52	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.7E-42	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MKGEGRKHTT ASPCAACKLL RRRCTQGCVF APHFPADEPQ KFASVHKVFG ASNVSKLLRE 60 IAAQHRGDAV SSLVYEANAR VRDPVYGCVG AITSLHCQIQ ALQAQLAVAR AKMLHLRMSH 120 AAYLARFSHT AMATASTSYT GSSSMSPEHK QLMEPDTTKS VFPLDMAMLD QSNLGEPQIW 180 SC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-45	11	114	9	112	LOB family transfactor Ramosa2.1
5ly0_B	5e-45	11	114	9	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397348.2	1e-132	PREDICTED: LOB domain-containing protein 4-like
Swissprot	Q9SHE9	1e-55	LBD4_ARATH; LOB domain-containing protein 4
TrEMBL	M0STW2	1e-133	M0STW2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P32000_001	1e-134	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP882	38	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	6e-53	LOB domain-containing protein 4