PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P30860_001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family Dof
Protein Properties Length: 234aa    MW: 25704.7 Da    PI: 8.742
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P30860_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.71.3e-383392261
                 zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                           ++++l+cprC+stntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGg++rkn k+
  GSMUA_Achr4P30860_001 33 PKQNLRCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGSTRKNSKR 92
                           68999***************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074788.0E-233486IPR003851Zinc finger, Dof-type
PfamPF027011.2E-323591IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1063791IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103975IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MEISGATPEP AVLYIPSHQT TMHTDRERRT REPKQNLRCP RCESTNTKFC YYNNYNLSQP  60
RHFCKNCRRY WTKGGALRNI PVGGSTRKNS KRFNASSSSS AGCSIKRSNP PTPLPRLPDL  120
PKPEPFSVLY PPLDPDRHLL DMAGSFSSLL SSDGHLETFL GSIHPAGGGC ATSLPSSSSV  180
NRRSVRVQGT ESPSPAGDMS TPAVENVERL ETDSECWSAG WTDLAIYNPG SSMQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0281322e-49AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8.
GenBankAK0610002e-49AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence.
GenBankAK1008922e-49AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence.
GenBankAK1013212e-49AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence.
GenBankAP0052842e-49AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12.
GenBankAP0149582e-49AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
GenBankAY9554932e-49AY955493.2 Triticum aestivum Dof1 mRNA, complete cds.
GenBankCP0126102e-49CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.
GenBankGQ1835322e-49GQ183532.1 Oryza sativa Japonica Group Dof-type zinc finger protein 05 mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397467.11e-147PREDICTED: dof zinc finger protein DOF3.1-like
SwissprotQ94AR62e-35DOF31_ARATH; Dof zinc finger protein DOF3.1
TrEMBLM0STJ81e-172M0STJ8_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P30860_0011e-173(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP14037367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51700.11e-32DOF zinc finger protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]