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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
GSMUA_Achr4P30860_001 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family |
Dof |
Protein Properties |
Length: 234aa MW: 25704.7 Da PI: 8.742 |
Description |
Dof family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
GSMUA_Achr4P30860_001 | genome | CIRAD | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-Dof | 122.7 | 1.3e-38 | 33 | 92 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
++++l+cprC+stntkfCyynny+lsqPr+fCk+CrryWtkGGalrn+PvGg++rkn k+
GSMUA_Achr4P30860_001 33 PKQNLRCPRCESTNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGALRNIPVGGSTRKNSKR 92
68999***************************************************9875 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 234 aa
Download sequence Send
to blast |
MEISGATPEP AVLYIPSHQT TMHTDRERRT REPKQNLRCP RCESTNTKFC YYNNYNLSQP 60 RHFCKNCRRY WTKGGALRNI PVGGSTRKNS KRFNASSSSS AGCSIKRSNP PTPLPRLPDL 120 PKPEPFSVLY PPLDPDRHLL DMAGSFSSLL SSDGHLETFL GSIHPAGGGC ATSLPSSSSV 180 NRRSVRVQGT ESPSPAGDMS TPAVENVERL ETDSECWSAG WTDLAIYNPG SSMQ
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB028132 | 2e-49 | AB028132.1 Oryza sativa Japonica Group mRNA for Dof zinc finger protein, complete cds, clone: OsDof-8. |
GenBank | AK061000 | 2e-49 | AK061000.1 Oryza sativa Japonica Group cDNA clone:006-203-F09, full insert sequence. |
GenBank | AK100892 | 2e-49 | AK100892.1 Oryza sativa Japonica Group cDNA clone:J023130J11, full insert sequence. |
GenBank | AK101321 | 2e-49 | AK101321.1 Oryza sativa Japonica Group cDNA clone:J033034E07, full insert sequence. |
GenBank | AP005284 | 2e-49 | AP005284.3 Oryza sativa Japonica Group genomic DNA, chromosome 2, BAC clone:B1121A12. |
GenBank | AP014958 | 2e-49 | AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence. |
GenBank | AY955493 | 2e-49 | AY955493.2 Triticum aestivum Dof1 mRNA, complete cds. |
GenBank | CP012610 | 2e-49 | CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence. |
GenBank | GQ183532 | 2e-49 | GQ183532.1 Oryza sativa Japonica Group Dof-type zinc finger protein 05 mRNA, partial cds. |