PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P30470_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

Dof

Protein Properties

Length: 161aa MW: 18055.4 Da PI: 10.224

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P30470_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126.3	9.1e-40	40	100	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al cprC stntkfCyynnysl+qPryfCk+CrryWt GG+lrnvPvGgg+rknkkss GSMUA_Achr4P30470_001 40 KEQALGCPRCSSTNTKFCYYNNYSLTQPRYFCKSCRRYWTDGGSLRNVPVGGGSRKNKKSS 100 678999****************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-26	37	96	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.9E-34	42	98	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.863	44	98	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	46	82	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 161 aa Download sequence Send to blast
MDATQWPQVK LLQTLMSFIL CNTCTTARSQ EMERRPRPHK EQALGCPRCS STNTKFCYYN 60 NYSLTQPRYF CKSCRRYWTD GGSLRNVPVG GGSRKNKKSS LISSTTTKSS SSSSSSYAAA 120 AAALCLPIIM RSQESHHPNQ HSLGHESTPH HSTSFLFRLR A

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397508.2	1e-54	PREDICTED: dof zinc finger protein DOF1.8-like
Swissprot	Q8LAP8	3e-41	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	M0STF9	1e-116	M0STF9_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P30470_001	1e-116	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP140	37	367

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	2e-41	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]