PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P28810_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

LBD

Protein Properties

Length: 295aa MW: 32042 Da PI: 5.5642

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P28810_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	118.4	4.2e-37	17	118	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqq.q 86 +CaaCk+++rkC+k+C++apyf ae+ +++fa+vhklFGasnv+kll ++p ++r da+++l+yeA+ar+rdPvyG+v++i++lqq q GSMUA_Achr4P28810_001 17 RCAACKTMKRKCVKGCIFAPYFDAERgAARFAAVHKLFGASNVSKLLLQIPIDKRVDAIATLCYEAQARLRDPVYGCVAHIFALQQqQ 104 6*********************9989***************************************************97626 PP DUF260 87 leqlkaelallkee 100 + +l+ael+ l+++ GSMUA_Achr4P28810_001 105 VVNLRAELSILQTQ 118 899***999987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	21.686	16	119	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	4.8E-36	17	116	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MDSNTYSSQL GGGSGGRCAA CKTMKRKCVK GCIFAPYFDA ERGAARFAAV HKLFGASNVS 60 KLLLQIPIDK RVDAIATLCY EAQARLRDPV YGCVAHIFAL QQQQVVNLRA ELSILQTQLE 120 ALQELPLPPV PTFPSPTPFS SILPTTWGLS DVEAPLVQPS RQQHQLWTDG THLLAISGGG 180 DGVVANCSYA QENLLTGRPP SSSPSTADLS TFVAPDLVQP ASLHQQQHQL WSFRTNLPDG 240 MNYEENFLSG TDRLPPTILP TTGDRTARQH EPQQLWADGT SPSDGSGGDD GEWWW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-32	13	119	7	111	LOB family transfactor Ramosa2.1
5ly0_B	1e-32	13	119	7	111	LOB family transfactor Ramosa2.1
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Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398866.1	0.0	PREDICTED: LOB domain-containing protein 30-like
TrEMBL	M0SSZ3	0.0	M0SSZ3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P28810_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3346	37	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45420.1	9e-49	LOB domain-containing protein 18