PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P28210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 322aa MW: 36327 Da PI: 5.2393

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P28210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.1	1.5e-31	211	265	2	56
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 +r++W++eLH+rFv a++qLGG+++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ GSMUA_Achr4P28210_001 211 ARRCWSQELHRRFVLAIQQLGGAQVATPKQIRELMKVDGLTNDEVKSHLQKYRLH 265 699**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.439	207	267	IPR017930	Myb domain
SuperFamily	SSF46689	8.42E-16	211	268	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.5E-28	211	268	IPR009057	Homeodomain-like
Pfam	PF00249	1.2E-6	212	263	IPR001005	SANT/Myb domain
TIGRFAMs	TIGR01557	5.5E-26	212	265	IPR006447	Myb domain, plants

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 322 aa Download sequence Send to blast
MGSAVFEMGL ELELCATRVV GDFVKEVSAI ESGGSGRASR LEESIKFLEE EKRKIEAFRR 60 EVPICMRLLR EVIERLRMEI ERCRCESFGH VFEEFMPLKS KVEDDGGVKV ETDCRDKMNW 120 MSSVQLWSDN YSENDDEEKI VSNEQDGAVD HRQGKGKSLE CKSRSSGVEF LPFKALSPLA 180 ASSEEEEEKP ASALPELSLQ SPAINRTLDL ARRCWSQELH RRFVLAIQQL GGAQVATPKQ 240 IRELMKVDGL TNDEVKSHLQ KYRLHTERVH AQRLPNAVAT ADRAVVVLGG LWDREEQYTS 300 SSQQSFSQSG SPMSPFQLAG SR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397728.1	0.0	PREDICTED: myb family transcription factor EFM
TrEMBL	M0SST3	0.0	M0SST3_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P28210_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	9e-44	G2-like family protein