PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P27730_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family MYB_related
Protein Properties Length: 355aa    MW: 38397.3 Da    PI: 5.5862
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P27730_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.83.9e-161061146
                           TSSS-HHHHHHHHHHHHHTTTT.......-HHHHHHHHTTTS-HHHHHHHHHH CS
        Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.......tWktIartmgkgRtlkqcksrwqk 46
                           +g+WT+ Ed  lv+ v+++G g        W++Ia+ ++ gRt++++k++w++
  GSMUA_Achr4P27730_001 10 KGPWTPAEDAVLVEHVRRHGEGnwnalgnKWARIAAQLP-GRTDNEIKNYWNT 61
                           79*************************************.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.74567IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-20666IPR009057Homeodomain-like
SuperFamilySSF466893.23E-13768IPR009057Homeodomain-like
SMARTSM007175.7E-15965IPR001005SANT/Myb domain
PfamPF002493.5E-141061IPR001005SANT/Myb domain
CDDcd001673.54E-131263No hitNo description
PROSITE patternPS0017502534IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MGGGGEELKK GPWTPAEDAV LVEHVRRHGE GNWNALGNKW ARIAAQLPGR TDNEIKNYWN  60
TRLKRRQRAG LPIYPPDLQE AVRFDRHHQQ QHQAPISPRP LTPPPLLNPV DFHPPPRISL  120
PPLPQNPFAC QLGFGFLVSP LAPPPTPNSL FQQQHQIGPP PPLSPAFAVE TELPSCQSYS  180
GLVGGDNGQS SSGLLESLLQ GTGVAEDMRI GELLALQAAD EQVARWAQIF GDDGDEGIKE  240
ASQGFSLGSA TKLDRDMGEF GQTQSPCFSL MGRTLLLHPS HKSSTVFYAG TEIKCEPPGG  300
GSPMKGDTST LLDVQALTMS LVLKSNELAS SLSITSADED CNISSWPWSN MPGIR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398879.10.0PREDICTED: uncharacterized protein LOC103983386
TrEMBLM0SSN50.0M0SSN5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P27730_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74203750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.12e-31myb domain protein 101