PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P27250_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C2H2
Protein Properties Length: 178aa    MW: 18910.1 Da    PI: 8.133
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P27250_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.4e-055476123
                           EEETTTTEEESSHHHHHHHHHHT CS
                zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                           y C+ C ++F++   L  H+++H
  GSMUA_Achr4P27250_001 54 YACTFCRRVFRSAQALGGHMNVH 76
                           89*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.23E-75181No hitNo description
Gene3DG3DSA:3.30.160.605.9E-45280IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.5525481IPR007087Zinc finger, C2H2
SMARTSM003550.00865476IPR015880Zinc finger, C2H2-like
PfamPF139122.6E-65478IPR007087Zinc finger, C2H2
PROSITE patternPS0002805676IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MEAGLCTFEQ PSNPGRVNWR GRRCSSAEGE SWGVRAVAED TSGIVGTTWP PRSYACTFCR  60
RVFRSAQALG GHMNVHRRER ARLRQSCTSW SSAHASAAFP PPPPAPPEFS AVGGGVFLVY  120
SIGAGTGEVF VPSMSSSAFV SSSPYHRNGS AASCGTSKEG GDEGLVVEEL DLELRLGR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A2e-114976229superman protein
2l1o_A2e-114976229Transcriptional regulator SUPERMAN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398884.11e-126PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBLM0SSI71e-125M0SSI7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P27250_0011e-126(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP118522633
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17810.12e-24C2H2 family protein