PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P26080_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family ERF
Protein Properties Length: 406aa    MW: 44727.8 Da    PI: 8.4578
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P26080_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.58e-19204253255
                    AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + kl+g
  GSMUA_Achr4P26080_001 204 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEDAALAYDREAFKLRG 253
                            59******9.**********965...5*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000182.40E-32203263No hitNo description
SMARTSM003801.0E-39204267IPR001471AP2/ERF domain
SuperFamilySSF541711.9E-22204262IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.7E-32204262IPR001471AP2/ERF domain
PROSITE profilePS5103222.813204261IPR001471AP2/ERF domain
PRINTSPR003677.9E-11205216IPR001471AP2/ERF domain
PfamPF008476.4E-12205253IPR001471AP2/ERF domain
PRINTSPR003677.9E-11227243IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 406 aa     Download sequence    Send to blast
MESEKNGGSR GRREMGKLQL VVPDGTRRIP PPPGSWEATR PLKKIRSPDR HRSPSSSSTS  60
YSFDALSPAC SPRPFTSSRP IFPFACEGPQ PVLYAPPTLP LPSSNQFHQQ QQQQMISFAR  120
SHPYQIGAYP PSPLFMTEGA APVAMTRQQQ QMYQEQLLKY WSESLHLSPR GHFSGQERRR  180
TLSSVYAGFF RPPMLPSVSA PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEDA  240
ALAYDREAFK LRGDNARLNF PNLFLGKGGD GGSSRGEASC SSLSSSAPAT PQESKQHQQQ  300
DEPRQSNIPS AVAETTTGGT TSSVDSPSPS EMVWEDADAA WFSTWGPGSS VWDDIDGANS  360
LLFQSPLISI AESDMDCSSS SPACQETATT SASSNPYSPS LFMWKE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-20200261163ATERF1
3gcc_A2e-20200261163ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0149587e-54AP014958.1 Oryza sativa Japonica Group DNA, chromosome 2, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009397949.10.0PREDICTED: ethylene-responsive transcription factor ERF054-like
TrEMBLM0SS690.0M0SS69_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P26080_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36913268
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.15e-37ERF family protein