PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P25920_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 248aa    MW: 28045.1 Da    PI: 7.9523
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P25920_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like102.62.4e-321972255
                G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                           prl+WtpeLH++Fv+a+e+LGG++kAtPk +l+lm+  gLt++hvkSHLQ+YR+
  GSMUA_Achr4P25920_001 19 PRLKWTPELHQCFVHAIERLGGQDKATPKLVLQLMNTSGLTISHVKSHLQMYRS 72
                           8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.1591575IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.2E-311575IPR009057Homeodomain-like
SuperFamilySSF466891.97E-151775IPR009057Homeodomain-like
TIGRFAMsTIGR015573.1E-241972IPR006447Myb domain, plants
PfamPF002494.0E-102071IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MGNCRRNGAV RQYIRSKVPR LKWTPELHQC FVHAIERLGG QDKATPKLVL QLMNTSGLTI  60
SHVKSHLQMY RSTRNNMGRQ GMEIFHGRKH SCQGNDEGAD EQDDLGSTQA CDPTEEFQYQ  120
PMYSSLPLLK RARLDAQPNS KSGQCSQQIC ETVTSQYWIG NCMQTLAVDR GIKEEGISWQ  180
RDALQTEDMA ADHPTKLKVL GYMVEESDPF KVNEKSEKAF CTLLIFSPAK LLCLPSLNVS  240
FISLLVIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-192074357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-192074458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680570.11e-155PREDICTED: myb family transcription factor PHL6-like isoform X1
RefseqXP_018680571.11e-155PREDICTED: myb family transcription factor PHL6-like isoform X1
RefseqXP_018680572.11e-155PREDICTED: myb family transcription factor PHL6-like isoform X1
RefseqXP_018680573.11e-155PREDICTED: myb family transcription factor PHL6-like isoform X1
TrEMBLM0SS530.0M0SS53_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P25920_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29663583
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40260.12e-33G2-like family protein