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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P24580_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | ERF | ||||||||
Protein Properties | Length: 142aa MW: 15292 Da PI: 4.9386 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.8 | 2.7e-13 | 2 | 36 | 10 | 47 |
AP2 10 kkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaai 47 +++g+Wv+eIr+p++ + r++lg+f tae+Aa+a++ GSMUA_Achr4P24580_001 2 RNWGKWVSEIREPKK---KSRIWLGTFPTAEMAARAHD 36 57**********854...6*****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.87E-18 | 1 | 36 | No hit | No description |
PROSITE profile | PS51032 | 14.934 | 1 | 37 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.5E-12 | 1 | 63 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.2E-19 | 1 | 36 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-12 | 2 | 38 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 9.6E-8 | 2 | 37 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 142 aa Download sequence Send to blast |
MRNWGKWVSE IREPKKKSRI WLGTFPTAEM AARAHDLPRP ATAAPKDVQA AAALAAAATL 60 GGHSPGLCGS PESAPSQNEP SPIPHSPAPT SPRSDDDGAL FDLPDLLLDL REGFGHSSSW 120 NASSAEAGIE FRVEEPFLWE YY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009398119.1 | 4e-78 | PREDICTED: ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | Q8LBQ7 | 5e-30 | ERF34_ARATH; Ethylene-responsive transcription factor ERF034 | ||||
TrEMBL | M0SRR9 | 9e-98 | M0SRR9_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P24580_001 | 1e-98 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP159 | 35 | 354 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25820.1 | 1e-19 | ERF family protein |
Publications ? help Back to Top | |||
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