PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P23210_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 372aa MW: 41786.2 Da PI: 9.1388

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P23210_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	97.9	7e-31	255	310	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W++eLH+rF++a++qLGG ++AtPk+i++ mkv+gLt+++vkSHLQkYRl+ GSMUA_Achr4P23210_001 255 KARRCWSQELHRRFMRAIQQLGGVQVATPKQIRDRMKVDGLTNDEVKSHLQKYRLH 310 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.367	252	312	IPR017930	Myb domain
SuperFamily	SSF46689	9.86E-17	253	313	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.6E-27	254	314	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.4E-25	255	310	IPR006447	Myb domain, plants
Pfam	PF00249	9.8E-7	257	308	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 372 aa Download sequence Send to blast
MAVAEEMGLE MKLCAMRTVG GFLKEASAIE CGDGGRAARL EESIRSLEEE KRKIEAFKRE 60 LPLCMHLLGE VIEGLNKEIE RFRCERFGRA FEEFVPVKSK VEEGGGIKEE TEYKDKRNWM 120 SSAKLWNDNC SQNNNDSKKH DKIKFKEVER RIFTKDGDSH RRQGKENFFS ERKSRNGGGA 180 FVPFRGLPPF ADSCKREEEK PAAALPDLSL QSPAIRNHHV SGCASRAVGN APEMTPATVG 240 AHVSLQSLQQ QPPRKARRCW SQELHRRFMR AIQQLGGVQV ATPKQIRDRM KVDGLTNDEV 300 KSHLQKYRLH TRRMSNASAI PQDQHTCSSQ QSVSQSNSPQ SPLQLAGSAL ALSVTAGESL 360 EDDGKSESYS WK

Sequence ? help Back to Top

Protein Sequence Length: 372 aa Download sequence Send to blast

MAVAEEMGLE MKLCAMRTVG GFLKEASAIE CGDGGRAARL EESIRSLEEE KRKIEAFKRE  60
LPLCMHLLGE VIEGLNKEIE RFRCERFGRA FEEFVPVKSK VEEGGGIKEE TEYKDKRNWM  120
SSAKLWNDNC SQNNNDSKKH DKIKFKEVER RIFTKDGDSH RRQGKENFFS ERKSRNGGGA  180
FVPFRGLPPF ADSCKREEEK PAAALPDLSL QSPAIRNHHV SGCASRAVGN APEMTPATVG  240
AHVSLQSLQQ QPPRKARRCW SQELHRRFMR AIQQLGGVQV ATPKQIRDRM KVDGLTNDEV  300
KSHLQKYRLH TRRMSNASAI PQDQHTCSSQ QSVSQSNSPQ SPLQLAGSAL ALSVTAGESL  360
EDDGKSESYS WK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC226043	0.0	AC226043.1 Musa acuminata clone BAC MA4-57L19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398291.1	0.0	PREDICTED: myb family transcription factor EFM isoform X2
TrEMBL	M0SRD2	0.0	M0SRD2_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P23210_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1817	37	107

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03500.1	2e-47	G2-like family protein