PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23160_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family G2-like
Protein Properties Length: 272aa    MW: 29937.8 Da    PI: 9.3261
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23160_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.1e-3269122255
                G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                            pr+rWt++LH++Fv+av+ LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  GSMUA_Achr4P23160_001  69 PRMRWTSTLHAHFVHAVKLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRT 122
                            9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.56E-1566123IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.5E-2867123IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-2369122IPR006447Myb domain, plants
PfamPF002494.7E-770121IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0080060Biological Processintegument development
GO:0005618Cellular Componentcell wall
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MSTIYPDLSL HISPPSVSLN HAEPRLSLGL QSPGSSLSNH HEKLHRPQIC GFKRSSRSAH  60
GGKRSVRAPR MRWTSTLHAH FVHAVKLLGG HERATPKSVL ELMNVKDLTL AHVKSHLQMY  120
RTVKSTDRGE AGQGQADMGI SQRTGMEEVE GGLPCDKAGS EITSSYHSLS TPTPPTTQVK  180
SPREMYPSAE RHAWNPSIKQ NGLAYPFFRS DDLLSNDYQA LVEDQPQALT QSQEQRLNLV  240
PNSIGAAHTK MPDLEISLGS HDASKMLVNY IA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J6e-1770124458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00107PBMTransfer from AT5G42630Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2260431e-114AC226043.1 Musa acuminata clone BAC MA4-57L19, complete sequence.
GenBankAC2260441e-114AC226044.1 Musa acuminata clone BAC MA4-69C10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398300.10.0PREDICTED: probable transcription factor KAN4 isoform X1
TrEMBLM0SRC70.0M0SRC7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23160_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP37423168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G42630.22e-49G2-like family protein