PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P23030_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family NAC
Protein Properties Length: 250aa    MW: 28758.3 Da    PI: 8.0398
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P23030_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM149.91.3e-46181463128
                    NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                            pGfrF+Ptdee+v +yL++kv++k+l++ evike+diyk++PwdLp kv+++  e yfF++r +ky+++ r+nr+t sg+Wkatg d+
  GSMUA_Achr4P23030_001  18 PGFRFRPTDEEIVGFYLRRKVDEKPLSV-EVIKEMDIYKYDPWDLP-KVRSTGCEEYFFCRRGRKYKNSIRPNRVTGSGFWKATGVDR 103
                            9***************************.99***************.677777899******************************** PP

                    NAM  91 evlsk..kgelvglkktLvfy...kgrapkgektdWvmheyrl 128
                            +++++  +g  +glkk+Lvfy   +  a kg+kt+W+mhe+rl
  GSMUA_Achr4P23030_001 104 PIYAAgnSGDCIGLKKSLVFYsrgRTAAAKGTKTEWMMHEFRL 146
                            ****8666667**********86656899************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.48E-5015167IPR003441NAC domain
PROSITE profilePS5100551.06816167IPR003441NAC domain
PfamPF023651.0E-2418146IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MWREKGRVME DEDVVPLPGF RFRPTDEEIV GFYLRRKVDE KPLSVEVIKE MDIYKYDPWD  60
LPKVRSTGCE EYFFCRRGRK YKNSIRPNRV TGSGFWKATG VDRPIYAAGN SGDCIGLKKS  120
LVFYSRGRTA AAKGTKTEWM MHEFRLPCDS PCTQEAEVWT ICRVFKRSVS HRANPNSWKA  180
SDHKEQTPPE SSSESFNGNY FHGGQWNSTN QASVPLCSDT VQSPSMNEFF SGDDNWDELG  240
RIMNSMISNI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-411817019168NO APICAL MERISTEM PROTEIN
1ut4_B3e-411817019168NO APICAL MERISTEM PROTEIN
1ut7_A3e-411817019168NO APICAL MERISTEM PROTEIN
1ut7_B3e-411817019168NO APICAL MERISTEM PROTEIN
3swm_A4e-411817222173NAC domain-containing protein 19
3swm_B4e-411817222173NAC domain-containing protein 19
3swm_C4e-411817222173NAC domain-containing protein 19
3swm_D4e-411817222173NAC domain-containing protein 19
3swp_A4e-411817222173NAC domain-containing protein 19
3swp_B4e-411817222173NAC domain-containing protein 19
3swp_C4e-411817222173NAC domain-containing protein 19
3swp_D4e-411817222173NAC domain-containing protein 19
4dul_A3e-411817019168NAC domain-containing protein 19
4dul_B3e-411817019168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398319.20.0PREDICTED: transcription factor JUNGBRUNNEN 1-like isoform X2
SwissprotQ9SK555e-75NAC42_ARATH; Transcription factor JUNGBRUNNEN 1
TrEMBLM0SRB40.0M0SRB4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P23030_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.12e-77NAC domain containing protein 42
Publications ? help Back to Top
  1. Shahnejat-Bushehri S,Nobmann B,Devi Allu A,Balazadeh S
    JUB1 suppresses Pseudomonas syringae-induced defense responses through accumulation of DELLA proteins.
    Plant Signal Behav, 2016. 11(6): p. e1181245
    [PMID:27159137]
  2. Shahnejat-Bushehri S,Tarkowska D,Sakuraba Y,Balazadeh S
    Arabidopsis NAC transcription factor JUB1 regulates GA/BR metabolism and signalling.
    Nat Plants, 2016. 2: p. 16013
    [PMID:27249348]
  3. Shahnejat-Bushehri S, et al.
    Arabidopsis NAC Transcription Factor JUNGBRUNNEN1 Exerts Conserved Control Over Gibberellin and Brassinosteroid Metabolism and Signaling Genes in Tomato.
    Front Plant Sci, 2017. 8: p. 214
    [PMID:28326087]
  4. Sakuraba Y,Bülbül S,Piao W,Choi G,Paek NC
    Arabidopsis EARLY FLOWERING3 increases salt tolerance by suppressing salt stress response pathways.
    Plant J., 2017. 92(6): p. 1106-1120
    [PMID:29032592]
  5. Ebrahimian-Motlagh S, et al.
    JUNGBRUNNEN1 Confers Drought Tolerance Downstream of the HD-Zip I Transcription Factor AtHB13.
    Front Plant Sci, 2017. 8: p. 2118
    [PMID:29326734]