PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P21820_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 645aa    MW: 71990.7 Da    PI: 7.1916
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P21820_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.14.9e-0694120326
                            S---SGGGGTS...--TTTTT-SS-SS CS
                zf-CCCH   3 telCrffartG...tCkyGdrCkFaHg 26 
                            + +C+  a++G    C+y ++C+F+H+
  GSMUA_Achr4P21820_001  94 RNICPEVAKSGnadACPYRGNCRFNHD 120
                            568***********************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.56391122IPR000571Zinc finger, CCCH-type
PROSITE profilePS501037.46135160IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:3.20.20.704.7E-74289532IPR013785Aldolase-type TIM barrel
SuperFamilySSF513955.8E-64293606No hitNo description
CDDcd028012.21E-95293528No hitNo description
PfamPF012071.8E-51296563IPR001269tRNA-dihydrouridine synthase
PROSITE patternPS011360377395IPR018517tRNA-dihydrouridine synthase, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008033Biological ProcesstRNA processing
GO:0055114Biological Processoxidation-reduction process
GO:0017150Molecular FunctiontRNA dihydrouridine synthase activity
GO:0046872Molecular Functionmetal ion binding
GO:0050660Molecular Functionflavin adenine dinucleotide binding
Sequence ? help Back to Top
Protein Sequence    Length: 645 aa     Download sequence    Send to blast
MEGAAPAKEG SESVGALESE GATRPRPEDL VARAIAPVKA EYLRPPPSRS VAVDSGVEDG  60
SIEKKSSSAN VVVKEKKSRR QLKRERKQEQ KSTRNICPEV AKSGNADACP YRGNCRFNHD  120
MDAYLAEKPP DLEGTCPFVS AEEFCPYGIT CRYASTHRQQ TSLKLEVPAT KSSEVNSLNK  180
DLQKLLWKNK VSFPNADLQL KLLGLEVAPT TCLENDCLDN GSISDDSRPL KKTKSQADKI  240
DSSPKTKNFE ESQDSCLQNG LEDVSPDNLY SSKDDLSLKP HAREIKLIDF RGKLYLAPLT  300
TVGNLPFRRI CKALGADITC GEMAMCTNLL QGQASEWALL RRHSSEDIFG VQICGAYPDT  360
VARTVELIDR ECEVDFIDIN MGCPIDIVVN KQAGSALLTK PLRMKNIIQA ASSTLSKPLT  420
VKVRTGYFEG RNRIDSLVSD ISNWGAGALT IHGRSRQQRY SKLADWDYIY ECAKKAPESL  480
QVLGNGDIFS YTDWIKHTLD CPKLSTCMIA RGALIKPWIF TEIKEQRHWD ISSGERFNIL  540
KDFVQSGLHH WGSDTKGVET TRHFLLEWLS YTYRYIPLGL LDVVPQRLNW RPPSYYGRDD  600
LETLMASDSA ADWIRISEML LGKVPEGFTF TPKHKSNAYD SAENG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ei9_A4e-3029052527258tRNA-dihydrouridine synthase B
6ei9_B4e-3029052527258tRNA-dihydrouridine synthase B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCatalyzes the synthesis of dihydrouridine, a modified base found in the D-loop of most tRNAs. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM3992250.0KM399225.1 Musa acuminata FMN-linked oxidoreductases superfamily protein mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398458.10.0PREDICTED: tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
SwissprotQ7XT070.0DUS3L_ORYSJ; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like
TrEMBLM0SQZ50.0M0SQZ5_MUSAM; tRNA-dihydrouridine(47) synthase [NAD(P)(+)]
STRINGGSMUA_Achr4P21820_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103222527
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]