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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSMUA_Achr4P21600_001 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family |
HD-ZIP |
| Protein Properties |
Length: 277aa MW: 30622.4 Da PI: 10.3131 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr4P21600_001 | genome | CIRAD | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 58 | 1.6e-18 | 128 | 182 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ +++k+q +Lee F+ +++++ +++ LAk+l+L rqV vWFqNrRa+ k
GSMUA_Achr4P21600_001 128 RKKLRLSKDQSAILEESFKAHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTK 182
788899***********************************************98 PP
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| 2 | HD-ZIP_I/II | 121.9 | 3.1e-39 | 128 | 216 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88
+kk+rlsk+q+++LEesF+++++L+p++K +la++L+l+prqv+vWFqnrRARtk+kq+E+d e Lkr++d+l+een+rL+kev+eLr
GSMUA_Achr4P21600_001 128 RKKLRLSKDQSAILEESFKAHNTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTETDRELLKRCCDTLTEENRRLQKEVRELR 215
69*************************************************************************************9 PP
HD-ZIP_I/II 89 ee 90
+
GSMUA_Achr4P21600_001 216 -D 216
.4 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 277 aa
Download sequence Send
to blast |
MMMGKDDLGL SLSLSSSNLN LQLNLMPPSS SPASGPSTSP SFYRHQKGRW SDLVVHSAAE 60
SRPGPLLRGV DVNWTPPGGE ERNSGEDAGA SSPNSTLSSV SGKRAEQDLQ GPASSRGVSD 120
EEDAEGSRKK LRLSKDQSAI LEESFKAHNT LNPKQKLALA KQLNLRPRQV EVWFQNRRAR 180
TKLKQTETDR ELLKRCCDTL TEENRRLQKE VRELRDLKLS GPQCYMHTTP PTTLSLCPSC 240
ERISNSATTT AVFHRSRPFS MPIRRVLSSA HANRSSS
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| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 126 | 132 | SRKKLRL |
| 2 | 176 | 184 | RRARTKLKQ |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in the negative regulation of cell elongation and specific cell proliferation processes such as lateral root formation and secondary growth of the vascular system. Acts as mediator of the red/far-red light effects on leaf cell expansion in the shading response. Binds to the DNA sequence 5'-CAAT[GC]ATTG-3'. Negatively regulates its own expression. {ECO:0000269|PubMed:10477292, ECO:0000269|PubMed:11260495, ECO:0000269|PubMed:8449400}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Rapidly and strongly induced by lowering the ratio of red to far-red light. {ECO:0000269|PubMed:8106086}. |
| Publications
? help Back to Top |
- Carabelli M,Turchi L,Ruzza V,Morelli G,Ruberti I
Homeodomain-Leucine Zipper II family of transcription factors to the limelight: central regulators of plant development.
Plant Signal Behav, 2014.
[PMID:23838958] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Francisco M, et al.
Genome Wide Association Mapping in Arabidopsis thaliana Identifies Novel Genes Involved in Linking Allyl Glucosinolate to Altered Biomass and Defense.
Front Plant Sci, 2016. 7: p. 1010
[PMID:27462337] - Müller-Moulé P, et al.
YUCCA auxin biosynthetic genes are required for Arabidopsis shade avoidance.
PeerJ, 2016. 4: p. e2574
[PMID:27761349] - Ivarson E, et al.
Effects of Overexpression of WRI1 and Hemoglobin Genes on the Seed Oil Content of Lepidium campestre.
Front Plant Sci, 2016. 7: p. 2032
[PMID:28119714] - Kasulin L, et al.
A single haplotype hyposensitive to light and requiring strong vernalization dominates Arabidopsis thaliana populations in Patagonia, Argentina.
Mol. Ecol., 2017. 26(13): p. 3389-3404
[PMID:28316114] - Singh M,Gupta A,Singh D,Khurana JP,Laxmi A
Arabidopsis RSS1 Mediates Cross-Talk Between Glucose and Light Signaling During Hypocotyl Elongation Growth.
Sci Rep, 2017. 7(1): p. 16101
[PMID:29170398]
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