PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P19330_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family bHLH
Protein Properties Length: 387aa    MW: 40771.9 Da    PI: 6.9553
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P19330_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.46e-09220267455
                            HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                    HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN ++  L+el+P +    sk    a +L + +++++sLq
  GSMUA_Achr4P19330_001 220 SHSLAERARREKINARMKLLQELVPGC----SKITGTALVLDEIINHVQSLQ 267
                            8*************************9....88999*************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.79E-9214271No hitNo description
SuperFamilySSF474592.36E-15214285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.837216266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-14216285IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-6220267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.8E-8222272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MGPARCSGVG SGNSGAYTTE IAESLRFEEE IHSIVHPSLD SSPAAGGSFT ALLGLPANQA  60
VELLHETGPS EAPGSAAAPS PTGELWRLRL GEHAAGPLHL PLGCSPTFPS NAALVERAAR  120
FSVFAAEDSP ALSSGGGPSP RLKAEPLDSD SPPLLPIPTE KTQRPAKRKE CEKSKGPAKK  180
SKSAEETTAA AAKETAAENT DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ  240
ELVPGCSKIT GTALVLDEII NHVQSLQRQV EFLSMRLAAV NPRIDFGGLD SFLSAECGPL  300
ATANGRGGVA LDPALWSSHP VTANGARWLP QPQIRHVDVW PTQQSSMAWT RDGPAHPHAL  360
LNPGASLVGY DPASSVLLNS NQLKTEL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009398772.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ8VZ021e-67BH048_ARATH; Transcription factor bHLH48
TrEMBLM0SQ960.0M0SQ96_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P19330_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP69322735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-64bHLH family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]