PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P19330_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

bHLH

Protein Properties

Length: 387aa MW: 40771.9 Da PI: 6.9553

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P19330_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.4	6e-09	220	267	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + sk a +L + +++++sLq GSMUA_Achr4P19330_001 220 SHSLAERARREKINARMKLLQELVPGC----SKITGTALVLDEIINHVQSLQ 267 8***********************9....88999***********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	1.79E-9	214	271	No hit	No description
SuperFamily	SSF47459	2.36E-15	214	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.837	216	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.1E-14	216	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.9E-6	220	267	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-8	222	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MGPARCSGVG SGNSGAYTTE IAESLRFEEE IHSIVHPSLD SSPAAGGSFT ALLGLPANQA 60 VELLHETGPS EAPGSAAAPS PTGELWRLRL GEHAAGPLHL PLGCSPTFPS NAALVERAAR 120 FSVFAAEDSP ALSSGGGPSP RLKAEPLDSD SPPLLPIPTE KTQRPAKRKE CEKSKGPAKK 180 SKSAEETTAA AAKETAAENT DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ 240 ELVPGCSKIT GTALVLDEII NHVQSLQRQV EFLSMRLAAV NPRIDFGGLD SFLSAECGPL 300 ATANGRGGVA LDPALWSSHP VTANGARWLP QPQIRHVDVW PTQQSSMAWT RDGPAHPHAL 360 LNPGASLVGY DPASSVLLNS NQLKTEL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MGPARCSGVG SGNSGAYTTE IAESLRFEEE IHSIVHPSLD SSPAAGGSFT ALLGLPANQA  60
VELLHETGPS EAPGSAAAPS PTGELWRLRL GEHAAGPLHL PLGCSPTFPS NAALVERAAR  120
FSVFAAEDSP ALSSGGGPSP RLKAEPLDSD SPPLLPIPTE KTQRPAKRKE CEKSKGPAKK  180
SKSAEETTAA AAKETAAENT DGEKLPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ  240
ELVPGCSKIT GTALVLDEII NHVQSLQRQV EFLSMRLAAV NPRIDFGGLD SFLSAECGPL  300
ATANGRGGVA LDPALWSSHP VTANGARWLP QPQIRHVDVW PTQQSSMAWT RDGPAHPHAL  360
LNPGASLVGY DPASSVLLNS NQLKTEL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009398772.1	0.0	PREDICTED: transcription factor bHLH48-like
Swissprot	Q8VZ02	1e-67	BH048_ARATH; Transcription factor bHLH48
TrEMBL	M0SQ96	0.0	M0SQ96_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P19330_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6932	27	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57800.2	1e-64	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]