PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P19140_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C3H

Protein Properties

Length: 292aa MW: 32137.1 Da PI: 8.9626

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P19140_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	25.1	3.1e-08	39	63	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC+ f++ GtC+y +C+FaHg GSMUA_Achr4P19140_001 39 FKTKLCCKFRA-GTCPYITNCNFAHG 63 69*******.***********8 PP
2	zf-CCCH	24.2	6e-08	110	135	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk ++C+ f+ C+yGd+C+F+H+ GSMUA_Achr4P19140_001 110 YKGRRCKKFYTEEGCPYGDSCTFIHD 135 899**********************7 PP
3	zf-CCCH	39.2	1.2e-12	171	196	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+ C+ + tG+C++G++C+FaHg GSMUA_Achr4P19140_001 171 WKTRTCHKWEMTGYCPFGNKCHFAHG 196 8************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	4.32E-8	36	69	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.4E-14	36	71	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.0037	38	64	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.953	38	65	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	1.7E-5	39	63	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	2.2E-9	109	137	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.948	109	137	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.006	109	136	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.28E-7	109	137	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.3E-5	110	135	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-15	166	200	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.7E-9	167	201	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.765	170	198	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.5E-7	170	197	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	9.3E-10	171	196	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MHLFTSVTLK LYLQRRNSQA DAQGGNRTTT SKAIGKMFFK TKLCCKFRAG TCPYITNCNF 60 AHGIEELRRP PPNWQEIVAA QEEGSSEPRE ERRIPTMNSS VVAGESERSY KGRRCKKFYT 120 EEGCPYGDSC TFIHDEQSKA RESVTISLSP MVGGSGLGGG ANAPTQKPSN WKTRTCHKWE 180 MTGYCPFGNK CHFAHGAAEL HRYGGGPVET EGRDASLVVS DSKHGGVHTK FLPSDASVAS 240 NSSVPHADMY HIGVPSQRSA GVVQRQGQRS VGKWKGPDKI SKIYGDWIDD IE

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009397128.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 56-like isoform X1
Swissprot	Q84UQ3	1e-119	C3H56_ORYSJ; Zinc finger CCCH domain-containing protein 56
TrEMBL	M0SQ77	0.0	M0SQ77_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P19140_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6615	38	53

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32360.1	1e-100	C3H family protein