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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P19010_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 801aa MW: 88171.2 Da PI: 6.1313 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 62.2 | 7.7e-20 | 106 | 161 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++ +++t+ q++e+e+lF+++++p++++r +L+++l+L+ rqVk+WFqNrR+++k GSMUA_Achr4P19010_001 106 RKRYHRHTTRQIQEMEALFKECPHPDEKQRMKLSQELSLKPRQVKFWFQNRRTQMK 161 788999***********************************************998 PP | |||||||
2 | START | 105.4 | 9.5e-34 | 280 | 531 | 3 | 206 |
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS..............SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskv.............dsgealrasgvvdmvlallveellddkeqWdetla 77 a +aa+ lv++ + p+W + +evl +e +k+ ++ea+r+s++v+m++ +lv +ld +W ++ GSMUA_Achr4P19010_001 280 AITAADHLVRMCRTNGPLWIRRD--GRTTEVLDLEEHAKNfswpmdlkqqhgeIRTEASRDSAMVIMNSITLVDAFLDAD-KWMGLFP 364 56677777788888888887777..3333333333333333445556666677899************************.8888888 PP ....EEEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE..TTS-EEEEEEEEE-TTS--..-TTSEE-EESSEEE CS START 78 ....kaetlevissg......galqlmvaelqalsplvp.RdfvfvRyirq.lgagdwvivdvSvdseqkppe.sssvvRaellpSgi 152 ka+t++v+s+g g l+l aelq+lsplvp R+ f Ry + +++g+w+ivd vd + + + s + R +++Sg+ GSMUA_Achr4P19010_001 365 svvsKATTVQVLSPGvaghgnGCLHLLHAELQFLSPLVPaREAHFFRYLQHnSEEGTWIIVDFPVDGCVDGLQtSLPWYR--RRTSGC 450 8888******************************************************************9855555555..9***** PP EEEEECTCE...........................EEEEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 153 liepksngh...........................skvtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 +i++++ng+ v wveh++++++ +h+++ ++v++g+a+ga +wv+tlqrqce+ GSMUA_Achr4P19010_001 451 VIQDMPNGYskvqnelrflsaklmfsikssvlipfiNDVMWVEHAEVEDKPVHQIFDQFVSTGVAFGATRWVSTLQRQCER 531 *******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 2.5E-20 | 83 | 165 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 7.27E-19 | 94 | 164 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.054 | 103 | 163 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.0E-17 | 104 | 167 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.98E-18 | 105 | 164 | No hit | No description |
Pfam | PF00046 | 3.5E-17 | 106 | 161 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 138 | 161 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 35.703 | 269 | 534 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.0E-18 | 272 | 458 | No hit | No description |
CDD | cd08875 | 2.09E-96 | 273 | 530 | No hit | No description |
SMART | SM00234 | 9.9E-14 | 278 | 531 | IPR002913 | START domain |
Pfam | PF01852 | 9.3E-27 | 281 | 531 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.0E-18 | 486 | 533 | No hit | No description |
SuperFamily | SSF55961 | 1.06E-19 | 548 | 782 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 801 aa Download sequence Send to blast |
MYGDCQVLSS MVSGNVASPD SLFASPIQNP NLGFMANMPP FNAFSSIIPK EEGLMLIGRG 60 VSKEEEMESG SGSGPLDGVL SCGEEHDNEL QQQPPSQQQQ QPVAKRKRYH RHTTRQIQEM 120 EALFKECPHP DEKQRMKLSQ ELSLKPRQVK FWFQNRRTQM KAQQDRADNV VLRAENESLK 180 NENFRLQAAI QNVVCPNCGG PAILGEMSFD EQQLRIENAR LKDELERLSC IASRYSGRQQ 240 QPLVVSCNDI IPVPQISDQA SPFSGMLILD QEKPLVLDLA ITAADHLVRM CRTNGPLWIR 300 RDGRTTEVLD LEEHAKNFSW PMDLKQQHGE IRTEASRDSA MVIMNSITLV DAFLDADKWM 360 GLFPSVVSKA TTVQVLSPGV AGHGNGCLHL LHAELQFLSP LVPAREAHFF RYLQHNSEEG 420 TWIIVDFPVD GCVDGLQTSL PWYRRRTSGC VIQDMPNGYS KVQNELRFLS AKLMFSIKSS 480 VLIPFINDVM WVEHAEVEDK PVHQIFDQFV STGVAFGATR WVSTLQRQCE RLASLLARNI 540 ADLGVIPTPE ARKNMMKLSQ RMMRTFCASV HASGMQSWTA LSESSDDTIR VTTRKNTEPG 600 QPNGVILTAV STTWLPFSHQ QVFELLTDEQ RRSQLDVLSS GNSLHEVAHI ANGSHPRNCV 660 SLLRVNAASN SSHSVELLLQ ESSTHPSGGS IVVYATIDVD AVQVAMSGED PSYIPLLPTG 720 FVISPAAPPN GVISSSDGSA STIGCLLTIG MQVLASAVPS AKLNLSSVTA INNHLRNTVQ 780 QISAVLGGGA VAEPAAMAPE Q |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018679997.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3 isoform X1 | ||||
Refseq | XP_018679998.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ROC3 isoform X1 | ||||
Swissprot | A2ZAI7 | 0.0 | ROC3_ORYSI; Homeobox-leucine zipper protein ROC3 | ||||
TrEMBL | M0SQ64 | 0.0 | M0SQ64_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P19010_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7846 | 34 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G46880.1 | 0.0 | homeobox-7 |