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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P16790_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | LBD | ||||||||
Protein Properties | Length: 190aa MW: 21102.9 Da PI: 7.0961 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.4 | 1.6e-40 | 34 | 133 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqle 88 +CaaCk+lrr+C+ +Cvlapyfp ++p +f +h++FGasn++k+l++lpe +r da+sslvyeA+arardPvyG++g+i +lq+q e GSMUA_Achr4P16790_001 34 PCAACKILRRRCSGGCVLAPYFPPTEPLEFTTAHRVFGASNIIKFLQELPEIQRADAASSLVYEANARARDPVYGSAGIIYQLQRQAE 121 7*************************************************************************************** PP DUF260 89 qlkaelallkee 100 l+++la++++e GSMUA_Achr4P16790_001 122 GLQSQLARVRAE 133 *******99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.643 | 33 | 134 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.5E-40 | 34 | 131 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MDASNTFCRS TSSPFPSTSP LPKPPIHHPV VHSPCAACKI LRRRCSGGCV LAPYFPPTEP 60 LEFTTAHRVF GASNIIKFLQ ELPEIQRADA ASSLVYEANA RARDPVYGSA GIIYQLQRQA 120 EGLQSQLARV RAELAAMQAQ HENLISILSV KPWPFPAGFE EHYSPYMYRG GFSSLDEYSQ 180 ASMWEESLWA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-38 | 29 | 134 | 6 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-38 | 29 | 134 | 6 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396864.2 | 1e-140 | PREDICTED: LOB domain-containing protein 1-like | ||||
Swissprot | Q9SK08 | 2e-56 | LBD11_ARATH; LOB domain-containing protein 11 | ||||
TrEMBL | M0SPJ3 | 1e-138 | M0SPJ3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P16790_001 | 1e-139 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2645 | 37 | 90 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28500.1 | 2e-58 | LOB domain-containing protein 11 |