PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P16050_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family SBP
Protein Properties Length: 360aa    MW: 39255.7 Da    PI: 7.9931
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P16050_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP132.51.4e-4176152278
                            -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                    SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                            C v+gC+adls+++eyhrrhkvCe+hsk+pvv+v+g+eqrfCqqCsrfh l+efDe krsCrrrL++hn+rrrk+q+
  GSMUA_Achr4P16050_001  76 CSVDGCTADLSKCREYHRRHKVCEAHSKTPVVVVRGQEQRFCQQCSRFHLLQEFDEVKRSCRRRLDGHNKRRRKSQP 152
                            **************************************************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.101.4E-3370137IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.17173150IPR004333Transcription factor, SBP-box
SuperFamilySSF1036126.41E-3975154IPR004333Transcription factor, SBP-box
PfamPF031101.6E-3076149IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDWHLKIPPW NPEELGRDAE LSVGSAAGGS NSGCFGLPDK SNDQAAASTT TAAASPSGPT  60
KRARARSRSP ANGASCSVDG CTADLSKCRE YHRRHKVCEA HSKTPVVVVR GQEQRFCQQC  120
SRFHLLQEFD EVKRSCRRRL DGHNKRRRKS QPDSTNSGRL FSDRQGGVST YPLVYPTTAA  180
ESNWAGDVTR TEKRTPPQLI SHHNFSISYS FGGERKQLHI IQDGETGNKA TQSQLNLCAV  240
TPYDGRSSGS RMFDCALSLL SSATSDVNLS HMVPLSDTIS MVQYGGFMQH TLSQAESDVG  300
TPTGCSMGKN AEINCHSKFQ VEGEDCLDGN SQSLPSYWPY TNPYGFLLII LDVLALVTVG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-30761491184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development. {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Negatively regulated by microRNAs miR156b and miR156h. {ECO:0000305|PubMed:16861571}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX6141901e-152JX614190.1 Gossypium hirsutum clone NBRI_GE57414 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396790.10.0PREDICTED: squamosa promoter-binding-like protein 16
SwissprotQ0JGI11e-50SPL2_ORYSJ; Squamosa promoter-binding-like protein 2
TrEMBLM0SPB90.0M0SPB9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P16050_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104563038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.16e-40SBP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]