PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P15370_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 483aa    MW: 53961.5 Da    PI: 8.6657
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P15370_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.93.1e-074264426
                           ---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH  4 elCrffartGtCkyGdrCkFaHg 26
                            +C++f+r+G C++Gd C  aHg
  GSMUA_Achr4P15370_001 42 TPCPDFRRGGGCRRGDACELAHG 64
                           69****************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.4E-43865IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.3713966IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.7E-54266IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-54264IPR000571Zinc finger, CCCH-type
SMARTSM0035677497IPR000571Zinc finger, CCCH-type
PfamPF128191.3E-21200322IPR024788Malectin-like carbohydrate-binding domain
PROSITE profilePS5001116.386289483IPR000719Protein kinase domain
Gene3DG3DSA:3.30.200.206.3E-8379413No hitNo description
SuperFamilySSF561123.46E-29380481IPR011009Protein kinase-like domain
PfamPF077145.0E-17383480IPR001245Serine-threonine/tyrosine-protein kinase catalytic domain
Gene3DG3DSA:1.10.510.102.5E-16414477No hitNo description
PROSITE patternPS001080464476IPR008271Serine/threonine-protein kinase, active site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006468Biological Processprotein phosphorylation
GO:0004672Molecular Functionprotein kinase activity
GO:0005524Molecular FunctionATP binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 483 aa     Download sequence    Send to blast
MYEFKVRRCP RGRSHDWTEC PYAHQGEKAR RRDPRRFHYS GTPCPDFRRG GGCRRGDACE  60
LAHGVFETWL HPARYRTQPC KDGAACRRRV CFFAHSPMQL RVVLPPSPTS PGKDGARVTL  120
SPTSTLAPAP MSPPSDGSSP PVSPVGVDEV VKAMRKLQLS KVSSAPPMCL RTVPSKQAGF  180
PTTLTIAFGT PPSILHGLPL STDLKVDNAD DLFEPPITVL QTAVTPATGR QLDFSLDAAS  240
PDDKLYHDLY FTQLRALTGN ATRVFNITRN GETRFSCYTP PYLSYGSICS TEPFEGYSRY  300
QYVLDATSNS TLPPIINAFE AYPLMQLTQA ATDSVDVDAM EEIKLQYQIK RNWMGDPCAP  360
KSCTWDGLNC VYSHKCANNI LHFNLQAQNS TKIYHRNLVS LVGYCIDKNC LALVYEYMQR  420
GSLHENLQDK AGRAKALNWG QRLRIALDAA RGLEYMHKGC RPPIIHRDIK TNNILLSEEL  480
EAR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4oh4_A6e-2338348385185Protein BRASSINOSTEROID INSENSITIVE 1
4oh4_B6e-2338348385185Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_A5e-2338348385185Protein BRASSINOSTEROID INSENSITIVE 1
4q5j_B5e-2338348385185Protein BRASSINOSTEROID INSENSITIVE 1
5lpb_A4e-2338348360160Protein BRASSINOSTEROID INSENSITIVE 1
5lpv_A4e-2338348360160Protein BRASSINOSTEROID INSENSITIVE 1
5lpw_A4e-2338348360160Protein BRASSINOSTEROID INSENSITIVE 1
5lpy_A4e-2338348360160Protein BRASSINOSTEROID INSENSITIVE 1
5lpz_A5e-2338348360160Protein BRASSINOSTEROID INSENSITIVE 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLM0SP520.0M0SP52_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P15370_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15783493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G19810.12e-53C3H family protein