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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P15020_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | VOZ | ||||||||
Protein Properties | Length: 621aa MW: 70413.6 Da PI: 5.8136 | ||||||||
Description | VOZ family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | VOZ | 424.8 | 1.3e-130 | 330 | 545 | 1 | 216 |
VOZ 1 pppsaflgpkcalwdctrpaqgsewlqdycssfhatlalneglpgttpvlrpkgidlkdgllfaalsakvqgkevgipecegaataks 88 pppsafl+pkcalwdc+rpaqgsew+qdycssfha+la+ eg+pg+tpvlrp+gidlkdg+lfaal+a+++gk+vgip+cegaataks GSMUA_Achr4P15020_001 330 PPPSAFLRPKCALWDCPRPAQGSEWCQDYCSSFHANLAVSEGPPGMTPVLRPGGIDLKDGPLFAALNARTEGKNVGIPVCEGAATAKS 417 89************************************************************************************** PP VOZ 89 pwnaaelfdlsllegetirewlffdkprrafesgnrkqrslpdysgrgwhesrkqvmkefgglkrsyymdpqpsssfewhlyeyeine 176 pwna+elfdls+lege++rewlffdkprrafesgnrkqrslpdy grgwhesrkq++ke+gg krsyymdpqp+++fewh+yeyein+ GSMUA_Achr4P15020_001 418 PWNAPELFDLSVLEGESLREWLFFDKPRRAFESGNRKQRSLPDYCGRGWHESRKQILKEYGGFKRSYYMDPQPLNNFEWHMYEYEINN 505 **************************************************************************************** PP VOZ 177 ldalalyrlelklvdekksakgkvskdsladlqkklgrlt 216 +da+alyrle+klvd kk ak+k+++++lad+q+++++l+ GSMUA_Achr4P15020_001 506 CDAFALYRLEFKLVDPKKGAKAKLTSNPLADFQQQMVKLN 545 *************************************996 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 621 aa Download sequence Send to blast |
MGKNCKSGSH RLFKAKAKNR VDDLQGMFND LQSARKESRI ADIAVLEEQV HQMLREWRAE 60 LNEVSPACSL QGNVKESSDL FSETLRLLQL SEEEDDATSK PAELALRSTP KPEELDVSKP 120 GVGSMSNGDL KGKEAVIALD QYQDVTNLHE NVMTFIVFQR SIRCREVFSK NLRRSLLEIV 180 MKLNFASNQR IRNDFKFYLP FWFMSEIGPP LSASWIYCNS GGRSIMIRAI QIMFPIPCET 240 MSICLFFQDY YVNQEISGHE FPQVYQYESN LPIGPHDVVL NCLEGTTYLD YQLYNLQQEM 300 ADHLYDNISV EHDGADVFPH MSDLLPTICP PPSAFLRPKC ALWDCPRPAQ GSEWCQDYCS 360 SFHANLAVSE GPPGMTPVLR PGGIDLKDGP LFAALNARTE GKNVGIPVCE GAATAKSPWN 420 APELFDLSVL EGESLREWLF FDKPRRAFES GNRKQRSLPD YCGRGWHESR KQILKEYGGF 480 KRSYYMDPQP LNNFEWHMYE YEINNCDAFA LYRLEFKLVD PKKGAKAKLT SNPLADFQQQ 540 MVKLNSNKSM DNKKITKNKT KVNQDTVGNS YSTSVVANQQ ETTASVFHAS EQVDSSNKNS 600 ACGPSHQYVY SIGSFNDDYI T |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator acting positively in the phytochrome B signaling pathway. Functions redundantly with VOZ2 to promote flowering downstream of phytochrome B (phyB). Down-regulates 'FLOWERING LOCUS C' (FLC) and up-regulates 'FLOWERING LOCUS T' (FT). Binds to the 38-bp cis-acting region of the AVP1 gene. Interacts with phyB in the cytoplasm and is translocated to the nucleus at signal transmission, where it is subjected to degradation in a phytochrome-dependent manner. {ECO:0000269|PubMed:15295067, ECO:0000269|PubMed:22904146}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By far-red light. {ECO:0000269|PubMed:22904146}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396504.1 | 0.0 | PREDICTED: transcription factor VOZ1 | ||||
Swissprot | Q9SGQ0 | 1e-132 | VOZ1_ARATH; Transcription factor VOZ1 | ||||
TrEMBL | M0SP17 | 0.0 | M0SP17_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P15020_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2343 | 38 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G28520.2 | 1e-133 | vascular plant one zinc finger protein |
Publications ? help Back to Top | |||
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