PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P14030_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 543aa MW: 57215.6 Da PI: 8.9138

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P14030_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.1	1.6e-05	74	96	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSMUA_Achr4P14030_001 74 FVCEICNKGFQRDQNLQLHRRGH 96 89*******************88 PP
2	zf-C2H2	11.1	0.0012	150	172	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +++ GSMUA_Achr4P14030_001 150 WKCDKCSKKYAVQSDWKAHSKVC 172 58*****************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.68E-7	73	96	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.8E-5	73	96	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	74	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.017	74	96	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	76	96	IPR007087	Zinc finger, C2H2
SMART	SM00355	230	115	145	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.2E-4	138	170	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.68E-7	145	170	No hit	No description
SMART	SM00355	150	150	170	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 543 aa Download sequence Send to blast
MELENSSVMT VSNSGSGEAS VSSSSQQQPP APPPPLPPPS IPGVKKKRNL PGNPDPEAEV 60 IALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTGKEA RKRVYVCPES 120 SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA VQSDWKAHSK VCGTREYRCD 180 CGTLFSRRDS FITHRAFCDA LAEENGKKGG AAPPTNSRPP SEDDGKAAAA AEATVAAAAE 240 EAPAAVAAPS SPLQQAAPLE QQGRWSSFVF VCSSCTSRFG FAEEEGRLLP SKSSVIGSFR 300 SLLLTKAVGL NRNGAITSSG SSSSSSNTSL FASLFASSGT TAAAHSTATL SDLMGTMSHV 360 DRTLMDPPLL CLATNGGPAS LFSPQAQAHD RRPFAPPPPS PHMSATALLQ KAAQMGAAAT 420 GSSFLKGFGL DTPTGQQESI QDSSLQWGRR HHHHQQLEPE PAPMLSAQLG LGLACEPDLM 480 MGSSPLFGPK PATLDLLGLG VGPLAGSTNV RIPALMTSIS SGGVDIGSGA TTGGWEGAER 540 KAK

Sequence ? help Back to Top

Protein Sequence Length: 543 aa Download sequence Send to blast

MELENSSVMT VSNSGSGEAS VSSSSQQQPP APPPPLPPPS IPGVKKKRNL PGNPDPEAEV  60
IALSPKTLLA TNRFVCEICN KGFQRDQNLQ LHRRGHNLPW KLRQRTGKEA RKRVYVCPES  120
SCVHHDPSRA LGDLTGIKKH FCRKHGEKKW KCDKCSKKYA VQSDWKAHSK VCGTREYRCD  180
CGTLFSRRDS FITHRAFCDA LAEENGKKGG AAPPTNSRPP SEDDGKAAAA AEATVAAAAE  240
EAPAAVAAPS SPLQQAAPLE QQGRWSSFVF VCSSCTSRFG FAEEEGRLLP SKSSVIGSFR  300
SLLLTKAVGL NRNGAITSSG SSSSSSNTSL FASLFASSGT TAAAHSTATL SDLMGTMSHV  360
DRTLMDPPLL CLATNGGPAS LFSPQAQAHD RRPFAPPPPS PHMSATALLQ KAAQMGAAAT  420
GSSFLKGFGL DTPTGQQESI QDSSLQWGRR HHHHQQLEPE PAPMLSAQLG LGLACEPDLM  480
MGSSPLFGPK PATLDLLGLG VGPLAGSTNV RIPALMTSIS SGGVDIGSGA TTGGWEGAER  540
KAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-33	146	204	3	61	Zinc finger protein JACKDAW
5b3h_F	1e-33	146	204	3	61	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK375990	1e-154	AK375990.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3111P12.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396403.1	0.0	PREDICTED: protein indeterminate-domain 2
Swissprot	Q9LVQ7	1e-144	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	M0SNR8	0.0	M0SNR8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P14030_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-102	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]