PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P13890_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 658aa    MW: 71058.8 Da    PI: 7.0466
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P13890_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07281301526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ G C++Gd C +aHg
  GSMUA_Achr4P13890_001 281 PCPDFRK-GSCRRGDMCEYAHG 301
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.06E-1383167IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029715.16788163IPR020683Ankyrin repeat-containing domain
PfamPF127963.0E-988157IPR020683Ankyrin repeat-containing domain
SMARTSM002480.03388118IPR002110Ankyrin repeat
CDDcd002042.03E-1188166No hitNo description
Gene3DG3DSA:1.25.40.204.3E-1589167IPR020683Ankyrin repeat-containing domain
SMARTSM002480.049123155IPR002110Ankyrin repeat
PROSITE profilePS5008810.873123158IPR002110Ankyrin repeat
SMARTSM003565.7E-6276302IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4280303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788281303IPR000571Zinc finger, CCCH-type
PfamPF006426.2E-5281301IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.6E-4309339IPR000571Zinc finger, CCCH-type
SMARTSM0035663311334IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MCGGPERIKP SSSSSPAPTS RGEHQQHGPV LGMNHLTVEI ADSSSLLELA ANNDAEAFGR  60
SLDRDPLAVD DVGLWYGRRK GSNRMVLEHR TPLMVAATYG SLDVLKFILS LPSVEVNRAS  120
APDNTTALHC AASGGSFDAV DAVKALLAAG ADPTLVDVNG DRPADVIVVP PKLPDVKSAL  180
EQLLGRRSNA SGGGADHHHL PLGDPDLPPV RVSEKKEYPV DPSLPDIKNS IYTTDEFRMF  240
SFKIRPCSRA YSHDWTECPF VHPGENARRR DPRKYHYSCV PCPDFRKGSC RRGDMCEYAH  300
GVFECWLHPA QYRTRLCKDG TSCSRRVCFF AHTNEELRPL YVSTGSAVPS PRATSAAMEM  360
AAAMGLMPGS PSSVSAVMSP FTPPMSPSAN GIGHSSLGWP QPNMPTLNLP ASNLQASRLR  420
SSLSVRDIPP DDLSAISEFD TQQLLNDLCY SRLKVAISPR YNSDQGAVFS PSHKAAILNQ  480
FQQQQSLLSP INTSVFSPKA PVSPVSSRLA VLSQRERQQQ TLRSLSSRDL GPISSPVVGS  540
PVNSSWSKWA SPSGTPDWTV NGEELGRLRR SSSFELRGNG DEPDLSWVHS LVRESPPEKV  600
ISAAMASAGP SSLSAVGGEN LNSNGQMNGH DQPALLGAWL EHQEILDGKH SVIFNSNI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009396384.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLM0SNQ40.0M0SNQ4_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P13890_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]