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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P13650_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | G2-like | ||||||||
Protein Properties | Length: 165aa MW: 18106.5 Da PI: 7.5429 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 44.8 | 2.7e-14 | 41 | 71 | 25 | 55 |
G2-like 25 ekAtPktilelmkvkgLtlehvkSHLQkYRl 55 AtPk+i++lm+v+ Lt +++kSHLQk+R+ GSMUA_Achr4P13650_001 41 AAATPKQIRKLMEVDELTGDEIKSHLQKFRI 71 67****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.1E-11 | 41 | 75 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.6E-12 | 42 | 72 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 2.33E-5 | 42 | 74 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MNGSCMHWSS SVAAMVGSQL RFSSSPCVGT YQSVNINCLS AAATPKQIRK LMEVDELTGD 60 EIKSHLQKFR IQSRRTSSMH HSSSNTSSAD FVVVRGIWIP TPEYSSICMA ADEAAAHPGN 120 LTKSAHFLRL LVAVALTGEI QSVRATEEDD LQHRVTVETI NPRWC |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | M0SNN0 | 1e-120 | M0SNN0_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P13650_001 | 1e-120 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G13300.1 | 1e-14 | G2-like family protein |