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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P12860_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | AP2 | ||||||||
Protein Properties | Length: 397aa MW: 44449.3 Da PI: 5.0702 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.9 | 3.4e-10 | 143 | 173 | 1 | 36 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkf 36 s+y+GV++++++grW+++I+d + k+++lg + GSMUA_Achr4P12860_001 143 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGMY 173 78*******************......55******88 PP | |||||||
2 | AP2 | 43.4 | 8.6e-14 | 275 | 325 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ + + k+++lg f t+ eAa+a+++a+ k++g GSMUA_Achr4P12860_001 275 SKYRGVTLHK-CGRWEARMGQfF-----SkKYVYLGLFETEIEAAQAYDKAAIKFNG 325 89********.7******88855.....34**********99***********9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 15.119 | 144 | 239 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-11 | 144 | 166 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.1E-23 | 144 | 245 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-11 | 203 | 239 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.54E-7 | 205 | 240 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.3E-9 | 275 | 325 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.57E-16 | 275 | 334 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 4.47E-22 | 275 | 333 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.8E-16 | 276 | 333 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.8E-28 | 276 | 339 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.226 | 276 | 333 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 277 | 288 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.3E-6 | 315 | 335 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 397 aa Download sequence Send to blast |
MEGAWDLNDA ASDEEDEKGK AAGATLAEAE NDDSGSSVVV IEASEEREDD SGAGRIFGFS 60 ISGRRGEQTS AESAPAVVTH QFFPFDDVEE ARAGKSSGAA PATRAHWAGV RVCHSSEPMV 120 AGMVTEAPPP VKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GMYEPRFRQN 180 SEAFERFDFV LDRVRNELLL IACHVNVFVG GFDTAYAAAR AYDRAAIKFR GLDADINFSL 240 DDYEEDIKQQ MGNVTKEEFV QVLRRQSTGY PRGSSKYRGV TLHKCGRWEA RMGQFFSKKY 300 VYLGLFETEI EAAQAYDKAA IKFNGKDAIT NFDPKIYKKE LDIQTEPPEH NLDLSLGGSG 360 SKRNYIETID DEGTNIVDQL QQMASDSEWN RNMIPKV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269|PubMed:1675158, ECO:0000269|PubMed:23034631, ECO:0000269|PubMed:7919989}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269|PubMed:12805630, ECO:0000269|PubMed:12893888, ECO:0000269|PubMed:14555699}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396266.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor TOE3 isoform X4 | ||||
Swissprot | P47927 | 4e-99 | AP2_ARATH; Floral homeotic protein APETALA 2 | ||||
TrEMBL | M0SNF1 | 0.0 | M0SNF1_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P12860_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP5514 | 36 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-97 | AP2 family protein |