PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P11370_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

G2-like

Protein Properties

Length: 127aa MW: 14101.8 Da PI: 8.956

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P11370_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.2	1.5e-32	18	72	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 ++rlrWt+eLHerF +av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl GSMUA_Achr4P11370_001 18 RQRLRWTNELHERFEDAVTQLGGPDRATPKGVLRIMGVPGLTIYHVKSHLQKYRL 72 58****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.889	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.9E-32	17	73	IPR009057	Homeodomain-like
SuperFamily	SSF46689	8.96E-19	17	73	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.3E-25	19	73	IPR006447	Myb domain, plants
Pfam	PF00249	3.1E-9	20	71	IPR001005	SANT/Myb domain
Pfam	PF14379	8.8E-9	105	125	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MGPINGVNNS SNPSLASRQR LRWTNELHER FEDAVTQLGG PDRATPKGVL RIMGVPGLTI 60 YHVKSHLQKY RLAKYVPESS ADGTRSEKKD DDNQISGPES SSGTQITEAL KLQMEVQKRL 120 QEQLEAS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-25	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-25	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-25	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-25	18	75	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00628	PBM	Transfer from PK10342.1	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009396092.1	2e-87	PREDICTED: myb family transcription factor PHL7-like isoform X2
Swissprot	Q9SJW0	5e-58	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	M0SN02	6e-89	M0SN02_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P11370_001	1e-89	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2220	38	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	2e-60	G2-like family protein