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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
GSMUA_Achr4P11210_001 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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| Family |
C3H |
| Protein Properties |
Length: 346aa MW: 37568.1 Da PI: 6.8378 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| GSMUA_Achr4P11210_001 | genome | CIRAD | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 39.3 | 1.1e-12 | 270 | 295 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+ktelC+ + ++G+C+y d C+FaHg
GSMUA_Achr4P11210_001 270 FKTELCNKWEESGECPYSDHCQFAHG 295
79***********************8 PP
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| 2 | zf-CCCH | 23.5 | 9.5e-08 | 308 | 333 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
yktelCr +GtC+yG rC+F H+
GSMUA_Achr4P11210_001 308 YKTELCRMVVSGGTCPYGHRCHFRHS 333
9**********************998 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| Gene3D | G3DSA:4.10.1000.10 | 6.1E-17 | 264 | 302 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 1.57E-9 | 266 | 301 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 2.4E-7 | 269 | 296 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.455 | 269 | 297 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 6.8E-10 | 270 | 295 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 7.33E-9 | 303 | 335 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.1E-13 | 303 | 334 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-5 | 307 | 334 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 14.126 | 307 | 335 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 1.3E-5 | 308 | 333 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0051511 | Biological Process | negative regulation of unidimensional cell growth |
| GO:1901347 | Biological Process | negative regulation of secondary cell wall biogenesis |
| GO:0003729 | Molecular Function | mRNA binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MQQEVVSPSN GDRLGSSITS PSFVSPDRRP QSPVYFNSGG DLPCTYPVFS PEDSLALLSP 60
LLPASGSVSI SPSSVYFDEV EAAATATENR LYLARLALQY QEMTENYDLC LSHLRDAAEE 120
LESLRRENAS LRAANVELTR RLCLLAGKHG GRVTISTAAA LADEFRGLSV AEPPPAEESP 180
TSRVSLPKSI SIRSSGYLKL NPGGGATSAA NRNGRFRLSN PVMIGSQRVS VGGGSTNKKG 240
ERSRGEDKEE EGGEGGGGAM EVEVYHQGMF KTELCNKWEE SGECPYSDHC QFAHGIAELR 300
PVLRHPRYKT ELCRMVVSGG TCPYGHRCHF RHSLSPSDHQ RLLLRP
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