PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | GSMUA_Achr4P10150_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
|
||||||||
Family | bZIP | ||||||||
Protein Properties | Length: 227aa MW: 25065.2 Da PI: 6.0309 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 25.3 | 3.2e-08 | 71 | 120 | 1 | 50 |
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 e+e kr r+ N+eA r++R++Kka + Lee+vk+L N++L +l+ GSMUA_Achr4P10150_001 71 EEEPKRYRKPLGNKEAVRKYREKKKAHAAFLEEEVKKLRLVNQQLLRRLQ 120 67889****************************************98876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.20.5.170 | 3.0E-14 | 69 | 138 | No hit | No description |
SMART | SM00338 | 4.0E-10 | 71 | 138 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 8.531 | 73 | 120 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF07716 | 1.3E-10 | 73 | 128 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 2.44E-7 | 75 | 132 | No hit | No description |
CDD | cd14686 | 2.30E-8 | 76 | 129 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 227 aa Download sequence Send to blast |
MDDGDVDLSS HLLVSDPEIN QSFDEFLRST STCTHTHTCN LPGPAAATHT HTCYHTHTQV 60 FAAGEGESVG EEEPKRYRKP LGNKEAVRKY REKKKAHAAF LEEEVKKLRL VNQQLLRRLQ 120 GQAALEAEVI RLRNLLVDFR GKIDAELGGF PFQNQCRPGC LQCDADGQCI SQNLAAIDWE 180 GSHVPAITNC QINPSGDIIM RQKPEIAEAV NSMNVVGSLI SSASQTE |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018680726.1 | 1e-171 | PREDICTED: basic leucine zipper 23-like | ||||
TrEMBL | M0SMN2 | 1e-170 | M0SMN2_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P10150_001 | 1e-170 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3831 | 36 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G16770.1 | 2e-22 | bZIP family protein |