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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P08610_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | Nin-like | ||||||||
Protein Properties | Length: 252aa MW: 28892.1 Da PI: 6.3985 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 85.7 | 4e-27 | 137 | 186 | 3 | 52 |
RWP-RK 3 keisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +++ ++++++yF++pi++AAke++v+lTvLK++CR++GI+RWPhRk+ksl GSMUA_Achr4P08610_001 137 NDVGFDEIKNYFYMPITKAAKEMNVGLTVLKKRCRELGIARWPHRKMKSL 186 57889*******************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.598 | 121 | 206 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 8.1E-22 | 139 | 186 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MKPVTHESNS CNKIVLLLRW CSGTDDLVPL PESLDPFDDT LGFSPSLISS DTSLPSVPCQ 60 YHVLPEPLNP VHLEDIDLEP FAWPHDCVST SNNEDLLLDP LPLNACDFPI VALDGESGWD 120 GKRTTEKRVD GRTSRLNDVG FDEIKNYFYM PITKAAKEMN VGLTVLKKRC RELGIARWPH 180 RKMKSLKSLI HNVQELGKGV CEESMRKELE TLEDHKRLME ENPEMQLTER TKKLRQACFK 240 ANYKRRRLSQ QF |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 243 | 247 | KRRRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396639.1 | 1e-162 | PREDICTED: protein RKD1-like | ||||
Swissprot | Q9FGD1 | 4e-39 | RKD3_ARATH; Protein RKD3 | ||||
TrEMBL | M0SM78 | 0.0 | M0SM78_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P08610_001 | 0.0 | (Musa acuminata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12888 | 23 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66990.1 | 1e-41 | RWP-RK domain-containing protein |
Publications ? help Back to Top | |||
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