PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P07320_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family GRAS
Protein Properties Length: 561aa    MW: 61507.9 Da    PI: 5.4363
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P07320_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.14.2e-1081194952374
                   GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetsekn.sseelaalklfsev 87 
                             e Ll+cA+ ++++d +la++ L +++e as+ gdp++R+a+yf+eAL++rl++ + ++   + +p++ s ++  +e +  +k+++++
  GSMUA_Achr4P07320_001 119 LESLLQCAR-LADSDPHLATKSLIHVRESASELGDPTERVAFYFAEALHRRLLGaQRKHPLPTSAPQPPSLDSsPEEFTLCYKVLNDA 205
                            578******.667799*************************************94333333333333333333478888999****** PP

                   GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg...skeeleetgerLakfAee 171
                            +P++kf++ltaNqaI ea+e++ r+Hi+Df+i qG+QWp+LlqaLa+Rp+g+p ++Ri g+ +p+ g    +++l +tg+rL++fA+ 
  GSMUA_Achr4P07320_001 206 CPYFKFAQLTANQAIIEATESAGRIHIVDFGIVQGVQWPSLLQALATRPSGKPsKVRISGIPAPALGgaaIATSLAATGNRLRDFAAL 293
                            *************************************************777769*********99999999**************** PP

                   GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfle 259
                            l+++fef+  + + + ++  +++rv+p+E ++Vn++lql +ll   ++++++ ++vL++ ksl P++++++e ea++n++ F++rf  
  GSMUA_Achr4P07320_001 294 LDLDFEFDC-ILTPIPEIAASTFRVDPDELVVVNFMLQLSQLL---GDSPEPVERVLRVAKSLGPRILTLAEYEASLNHAGFVDRFGA 377
                            *********.799******************************...555556669********************************* PP

                   GRAS 260 aleyysalfdsleaklpreseerikvErellgreivnvva.cegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk. 345
                            al +y+a+f+sl+  ++r++ er+ +Er+l+g +i ++v   eg++rr r+  +e+Wr+ +e++GF++vpls++a++qaklll +++ 
  GSMUA_Achr4P07320_001 378 ALGHYAAVFESLDPAMGRDAVERARMERVLIGHRILEAVGpFEGQNRRVRMAPKEEWRAVMERCGFSSVPLSNYAVSQAKLLLWNYNy 465
                            ***************************************84699*******************************************9 PP

                   GRAS 346 sdgyrve.eesgslvlgWkdrpLvsvSaWr 374
                            s  y++  +   +l+l W drpL++vS+Wr
  GSMUA_Achr4P07320_001 466 SSRYTLLdSPPPCLTLAWGDRPLLTVSSWR 495
                            888998725699*****************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.58192473IPR005202Transcription factor GRAS
PfamPF035141.5E-105119495IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 561 aa     Download sequence    Send to blast
MAYMCADSGN LMAIAQQHAS DHFPFVIPDP AAAFADPFAP DPIPGFLPPG GDSGRHLDHG  60
HFRMSDFGSS AATVAAEFDS DEWMESLIGE SPAESSIPPL ALVQHHQAAA RSISSPPLLE  120
SLLQCARLAD SDPHLATKSL IHVRESASEL GDPTERVAFY FAEALHRRLL GAQRKHPLPT  180
SAPQPPSLDS SPEEFTLCYK VLNDACPYFK FAQLTANQAI IEATESAGRI HIVDFGIVQG  240
VQWPSLLQAL ATRPSGKPSK VRISGIPAPA LGGAAIATSL AATGNRLRDF AALLDLDFEF  300
DCILTPIPEI AASTFRVDPD ELVVVNFMLQ LSQLLGDSPE PVERVLRVAK SLGPRILTLA  360
EYEASLNHAG FVDRFGAALG HYAAVFESLD PAMGRDAVER ARMERVLIGH RILEAVGPFE  420
GQNRRVRMAP KEEWRAVMER CGFSSVPLSN YAVSQAKLLL WNYNYSSRYT LLDSPPPCLT  480
LAWGDRPLLT VSSWRYFHFW LVGQMVNCGE RVASFSIEGC QTGRLFGEGR DTVFLFNREM  540
EQNWSGFFVS FFDTGISQHR P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1531154951375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395642.10.0PREDICTED: scarecrow-like protein 4
SwissprotQ9FL031e-154SCL4_ARATH; Scarecrow-like protein 4
TrEMBLM0SLU90.0M0SLU9_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P07320_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85693748
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.11e-133GRAS family protein
Publications ? help Back to Top
  1. Wortman JR, et al.
    Annotation of the Arabidopsis genome.
    Plant Physiol., 2003. 132(2): p. 461-8
    [PMID:12805579]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]