PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

GSMUA_Achr4P07200_001

Organism

Musa acuminata

Taxonomic ID

4641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa

Family

C2H2

Protein Properties

Length: 540aa MW: 57417.1 Da PI: 9.7112

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
GSMUA_Achr4P07200_001	genome	CIRAD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.3e-05	66	88	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H GSMUA_Achr4P07200_001 66 FVCEICSKGFQRDQNLQLHRRGH 88 89*******************88 PP
2	zf-C2H2	11.1	0.0012	142	164	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + GSMUA_Achr4P07200_001 142 WKCDKCSKKYAVQSDWKAHSKIC 164 58*****************9876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	6.5E-5	65	88	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.32E-6	65	88	No hit	No description
SMART	SM00355	0.036	66	88	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.887	66	88	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	68	88	IPR007087	Zinc finger, C2H2
SMART	SM00355	92	107	137	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	8.3E-4	130	163	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.32E-6	137	162	No hit	No description
SMART	SM00355	150	142	162	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 540 aa Download sequence Send to blast
MTISNSGSGE ASISSSDRLR APAPPSPLPP PSIAVVKKKR NLPGTPDPEA EVVALSPRTL 60 LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTGK EPRKRVYVCP EAGCVHHDPS 120 RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYR CDCGTLFSRR 180 DSFVTHRAIC DALAEESSKT ASPPTDPKPS AEDDGEAAAV SETTAAAAVV APPFSLQQVE 240 PLVRQGLWSS SSSLLPPPLF SSMASFNFDA IQNKNTRKLE NPIGSLQYVP PPSTSIANTS 300 CATASSSSRS NTSLFASLFA SSITTAAAHT TTFLSDRMGA MGHDDRPLME PPSLGLATNG 360 GPAWLFSPQA QAHGRRPFAP PAPSPHMSAT ALLQKAAHMV ATPTGSSFLK GFGLDAPTGH 420 QEKMIQGSNL QWGQQQHHHQ PETEPGAPML SAWLGLGLAY EPDLMTGSSS LFRAKPATTL 480 DLLGLGMGAV GGSAKGGLSA LTTSAGGGID MRSAAATGEW KGAERKPASP SSKCSDRKLM

Sequence ? help Back to Top

Protein Sequence Length: 540 aa Download sequence Send to blast

MTISNSGSGE ASISSSDRLR APAPPSPLPP PSIAVVKKKR NLPGTPDPEA EVVALSPRTL  60
LATNRFVCEI CSKGFQRDQN LQLHRRGHNL PWKLRQRTGK EPRKRVYVCP EAGCVHHDPS  120
RALGDLTGIK KHFCRKHGEK KWKCDKCSKK YAVQSDWKAH SKICGTREYR CDCGTLFSRR  180
DSFVTHRAIC DALAEESSKT ASPPTDPKPS AEDDGEAAAV SETTAAAAVV APPFSLQQVE  240
PLVRQGLWSS SSSLLPPPLF SSMASFNFDA IQNKNTRKLE NPIGSLQYVP PPSTSIANTS  300
CATASSSSRS NTSLFASLFA SSITTAAAHT TTFLSDRMGA MGHDDRPLME PPSLGLATNG  360
GPAWLFSPQA QAHGRRPFAP PAPSPHMSAT ALLQKAAHMV ATPTGSSFLK GFGLDAPTGH  420
QEKMIQGSNL QWGQQQHHHQ PETEPGAPML SAWLGLGLAY EPDLMTGSSS LFRAKPATTL  480
DLLGLGMGAV GGSAKGGLSA LTTSAGGGID MRSAAATGEW KGAERKPASP SSKCSDRKLM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	5e-33	138	202	3	67	Zinc finger protein JACKDAW
5b3h_F	5e-33	138	202	3	67	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT054502	1e-140	BT054502.1 Zea mays full-length cDNA clone ZM_BFc0103M17 mRNA, complete cds.
GenBank	BT054618	1e-140	BT054618.1 Zea mays full-length cDNA clone ZM_BFb0032E02 mRNA, complete cds.
GenBank	EU955578	1e-140	EU955578.1 Zea mays clone 1537717 nucleic acid binding protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009395625.1	0.0	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-130	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	M0SLT7	0.0	M0SLT7_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr4P07200_001	0.0	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP202	38	320

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66730.1	1e-100	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]