PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P06940_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 674aa    MW: 73006.8 Da    PI: 6.2337
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P06940_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.2e-07283303526
                            --SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                            +C++f++ G C++Gd C +aHg
  GSMUA_Achr4P06940_001 283 PCPDFRK-GSCRRGDMCEYAHG 303
                            8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484032.64E-1445170IPR020683Ankyrin repeat-containing domain
PfamPF127964.3E-887160IPR020683Ankyrin repeat-containing domain
SMARTSM002480.04991121IPR002110Ankyrin repeat
CDDcd002046.02E-1291169No hitNo description
Gene3DG3DSA:1.25.40.209.9E-1591170IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.68191161IPR020683Ankyrin repeat-containing domain
SMARTSM002480.064126158IPR002110Ankyrin repeat
PROSITE profilePS5008810.74126161IPR002110Ankyrin repeat
SMARTSM003565.7E-6278304IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-5281304IPR000571Zinc finger, CCCH-type
PfamPF006426.3E-5283303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.788283305IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4310341IPR000571Zinc finger, CCCH-type
SMARTSM0035639313336IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MCGGPERIRP SPSSLSSPTP SSQEEQQQHA PGLGMNHLTV ETDDFSSSLL ELAANDDVDA  60
FRQSLDRDPS AINEAGLWYS RRKGSNQMVL EHRTPLMVAA TYGSLSVLKL IVSLPSVDVN  120
RVSGPGNATA LHCAASGGSS DAVDAVKILL AAGADPTLVD ANGNRAADVI AVPPRLPDVK  180
NAIGQLLGRC SDISGGGFDR HHPPLSYPDL TVTVSERKEY PVDPTLPDIK NSIYATDEFR  240
MFSFKIRPCS RAYSHDWTEC PFAHPGENAR RRDPRKYHYS CVPCPDFRKG SCRRGDMCEY  300
AHGVFESWLH PAQYRTRICK DGTSCARRVC FFAHTDDELR PLYMSTGSAV SSPRASTASV  360
EMAAALGFMP GSPSSVSAGM SAFTPPMSPL ANGIGHSSLA WPQPNVPMLN LPVSNLQASR  420
LRSSLSAREM PVDDQLVMSE FDKQQLLNDW CQSRLSSSTA NHSVRTKAMN PSNLDDLFSA  480
EITSSPRYNS DQGCIFSPSH KTAILNHFQQ QQNLLSPINT GVPSPVSPLS SRLAVLSQRE  540
RQQQTLRSLS SRDFGPISSP ILDSPTNLSW SKWASPSGIP DWGVNGEELG LLRRSSSFEL  600
RGTGDEPDLS WVHSLVRDTP PEKMVSAAVA PAGPSDLPAI GVESSNSKGE MDGHDQAVVL  660
GAWLDNMQLD QIIT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009395592.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
RefseqXP_009395593.10.0PREDICTED: zinc finger CCCH domain-containing protein 24-like
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLM0SLR10.0M0SLR1_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P06940_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]