PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSMUA_Achr4P06500_001
Organism
Musa acuminata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
Family C3H
Protein Properties Length: 325aa    MW: 35824 Da    PI: 7.282
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSMUA_Achr4P06500_001genomeCIRADView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH43.45.5e-14249274126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                            +ktelC+ + ++G+C+yGd C+FaHg
  GSMUA_Achr4P06500_001 249 FKTELCNKWEESGECPYGDHCQFAHG 274
                            79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.107.7E-18243281IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-10245280IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-8248275IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.826248276IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-11249274IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-8282314IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-12282312IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.873286314IPR000571Zinc finger, CCCH-type
SMARTSM003561.2E-4286313IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MQHELDSPSN GDCFGSSIAS EPFVTPDRQS ATPYLNKDGD LPYWYSIFSP KEGTPSLVTT  60
PLAASGSILI PPPSSSFVEP EVAAADYGNR LYLARLTLQY QEVAERYDLC LSDLRDCTEE  120
IESLRRENAS IRIANAELAR RLGLIAGKHA GRESGGGHPF AGPPVAEKQV SLPKSISIRS  180
SGYLKLNQDG KSSSAAKRNG RFGQQRVYVG GDSNRKKGAR RGREDGEEDR EGGDGGGALE  240
LEVYHQGMFK TELCNKWEES GECPYGDHCQ FAHGITELRP VLRHPRYKTE PCRMILSGGA  300
CPYGHRCHFR HSFSLADHQR LLIRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-21249312467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0957554e-64FP095755.1 Phyllostachys edulis cDNA clone: bphylf030c20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018680005.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X1
RefseqXP_018680006.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X1
RefseqXP_018680007.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X1
RefseqXP_018680008.10.0PREDICTED: zinc finger CCCH domain-containing protein 9-like isoform X2
SwissprotQ6L5G11e-77C3H39_ORYSJ; Zinc finger CCCH domain-containing protein 39
TrEMBLM0SLL70.0M0SLL7_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr4P06500_0010.0(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27753784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66810.13e-57C3H family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]