PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSMUA_Achr4P05560_001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Musa
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Family | C2H2 | ||||||||
Protein Properties | Length: 230aa MW: 25680.8 Da PI: 11.2533 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00067 | 103 | 125 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+C ++F + L H rtH GSMUA_Achr4P05560_001 103 WRCPYCYRVFGSGQALGGHKRTH 125 58*******************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 2.7E-5 | 3 | 27 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 4 | 26 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.72 | 4 | 26 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 6 | 27 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.26E-5 | 80 | 126 | No hit | No description |
SMART | SM00355 | 0.41 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.203 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-11 | 104 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MERHRCKRCY RRFAHGRALA GHMRSHHVVP VRFPCPLPSP SVASSSSPDR ESDTESFLHR 60 WPKRRRSDGI GSSSRRRRSR FRCGTCRKDF SGASAAHHDA KLWRCPYCYR VFGSGQALGG 120 HKRTHLSSAV ATSPAPHLPH PPSPFAAAHR NNGGRDLNLP APLEEEAELS QQSSHASDFL 180 SPIRSPSETK KTPFWRQFES NPKARGSTKL HSRSLLFEAS IGNEDSIPSS |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 63 | 77 | RRRSDGIGSSSRRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009396593.1 | 2e-96 | PREDICTED: zinc finger protein ZAT1-like | ||||
TrEMBL | M0SLC3 | 1e-164 | M0SLC3_MUSAM; Uncharacterized protein | ||||
STRING | GSMUA_Achr4P05560_001 | 1e-165 | (Musa acuminata) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G02030.1 | 1e-07 | C2H2-like zinc finger protein |